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Publications of year 2009

Articles in journal or book chapters

  1. Oscar Acosta, Pierrick Bourgeat, Maria A. Zuluaga, Jurgen Fripp, Olivier Salvado, and Sebastien Ourselin. Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. Medical Image Analysis, 13(5):730-743, October 2009. [bibtex-entry]

  2. R. Chellali, C. Dumas, Nicolas Mollet, and G. Subileau. SyTroN: A Virtual Classroom for Collaborative and Distant E-Learning System by Teleoperating Real Devices. International Journal of Computer Games Technology, 2009:1--9 , 2009. [bibtex-entry]

  3. V. Doré and M. Cheriet. Robust NL-means filter with optimal pixel-wise smoothing parameter for statistical image denoising. IEEE Transactions on Signal Processing, 57(5):1703--1716, 2009. [bibtex-entry]

  4. J. Dowling. Current and future prospects for optoelectronic retinal prostheses. Eye, 23:1999-2005, 2009. [bibtex-entry]

  5. J. Dowling, M. Malaterre, P.B. Greer, and O. Salvado. Importing Contours from DICOM-RT structure sets. Insight Journal, July-December, 2009. [bibtex-entry]

  6. Cédric Dumas, Frédéric Jourdan, Patricia Plénacoste, Laurence Perron, and Amine Chellali. Guide de conception d'une technique de désignation 3D. Techniques et sciences informatiques, 28(6-7):799--829, September 2009. [bibtex-entry]

  7. Grant J Steyer, Debashish Roy, Olivier Salvado, Meredith E Stone, and David L Wilson. Removal of out-of-plane fluorescence for single cell visualization and quantification in cryo-imaging. Annals of Biomedical Engineering, 37(8):1613--1628, August 2009.
    Note: PMID: 19513848. [Abstract] [bibtex-entry]

  8. Z. Taylor, O. Comas, M. Cheng, J. Passenger, D.J. Hawkes, D. Atkinson, and S. Ourselin. On Modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution. Medical Image Analysis, 13(2):234--244 , April 2009. [bibtex-entry]

  9. L. Zhou, R. Hartley, L. Wang, P. Lieby, and N. Barnes. Identifying Anatomical Shape Difference by Regularized Discriminative Direction. IEEE Transactions on Medical Imaging, 28(6):937--950, 2009. [bibtex-entry]

  10. L. Zhou, P. Lieby, N. Barnes, C. Reglade-Meslin, J. Walker, N. Cherbuin, and R. Hartley. Hippocampal Shape Analysis for Alzheimer's Disease Using an Efficient Hypothesis Test and Regularized Discriminative Deformationn. Hippocampus, 19(6):533--540, 2009. [bibtex-entry]

Conference articles

  1. Erik Bonner, Oscar Acosta, Jurgen Fripp, and Olivier Salvado. A Quantitative Comparison of Three Methods For Inflating Cortical Meshes. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 1338-1341, June 2009 . IEEE. [bibtex-entry]

  2. P. Bourgeat, V. Villemagne, J. Fripp, K. Pike, P. Raniga, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, C. Rowe, and O. Salvado. Relation between amyloid burden, brain atrophy and cognition in Alzheimer's disease. In 12th International Conference on Alzheimer's Disease, Vienna, Austria, July 11-16 2009. . [bibtex-entry]

  3. Shekhar S. Chandra and Imants Svalbe. A Fast Number Theoretic Finite Radon Transform. In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, volume Melbourne, Best Poster Award, Melbourne, Australia, pages 361 - 368, December 2009. [bibtex-entry]

  4. M. Cheng, S. Riek, M. Watson, S. Ourselin, J. Passenger, and O. Salvado. Pneumatic Haptic Interface Fuzzy controller for Simulation of Abdominal Palpations During Colonoscopy. In Proceedings of the Third Joint Eurohaptic Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, pages 250-255, 2009. IEEE Press 2009. [bibtex-entry]

  5. M. Cheng, M. Watson, S. Riek, J. Passenger, and O. Salvado. The Development of a Haptic Device for Abdominal Palpations in Colonoscopy Simulation. In SimTecT Healthcare Simulation 2009, Brisbane, Australia, pages 63, September 2009. [bibtex-entry]

  6. T.R. Coles, D.A. Gould, N.W. John, and D.G. Caldwell. Haptic Palpation for the Femoral Pulse in Virtual Interventional Radiology. In Advances in Computer-Human Interaction, 2009, Second International Conference on, pages 193-198, 2009 . [bibtex-entry]

  7. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. B. Greer, J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, and O. Salvado. Nonrigid correction of interleaving artefacts in pelvic MRI. In Josien P. W. Pluim and Benoit M. Dawant, editors, Proceedings of SPIE Medical Imaging 2009: Image Processing, Florida, volume 7259, pages 72592P, 2009. SPIE. [bibtex-entry]

  8. J. Dowling, P. Fripp, J. Greer, J. Patterson, S. Ourselin, and O. Salvado. Automatic atlas-based segmentation of the prostate: A MICCAI 2009 Prostate Segmentation Challenge entry. In Proceedings of 2009 MICCAI Prostate Segmentation Challenge (London, September 2009), 2009. [bibtex-entry]

  9. J. Dowling, A. Neubert, J. Fripp P. Bourgeat, and J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, P. B. Greer, and O. Salvado. Atlas-based, automatic segmentation of the pelvis for prostate radiotherapy planning. In In Proceedings of the Royal Australian and New Zealand College of Radiologists (RANZCR, Australian Institute of Radiography (AIR) and the Australasian College of Physical Scientists & Engineers in Medicine (ACPSEM) Combined Scientific Meeting published in the Journal Of Medical Imaging and Radiation Oncology, Vol 53(supplement 1), p. 65, 2009. [bibtex-entry]

  10. J. Fripp, P. Bourgeat, C. Engstrom, S. Ourselin, S. Crozier, and O. Salvado. Automated Segmentation of the Menisci From MR Images. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 510-513, June 2009. [bibtex-entry]

  11. J. Fripp, V. Villemagne, P. Bourgeat, P. Raniga, O. Acosta, C. Szoeke, D. Ames, K.A. Ellis, C.L. Masters, C. Rowe, and O. Salvado. Characterizing 11C PiB PET Images.. In 12th International Conference on Alzheimer's Disease, 2009.
    Note: Accepted. [bibtex-entry]

  12. J. Lambert, J. Dowling, O. Salvado, J. Patterson, F. Menk, and P. Greer. Investigation of bulk electron density planning and automatic bone segmentation on T2* MR Images for MR-Based prostate radiotherapy planning. In To be presented at the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) 8-12 November, 2009. [bibtex-entry]

  13. Anthony Nguyen, Jason Dowling, Anthony Maeder, Phuong Nguyen, and Emma Brunton. Characterizing Image Properties for Digital Mammograms. In James R. Warren, editor, Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009), volume 97 of CRPIT, Wellington, New Zealand, pages 19-24, 2009. ACS. [bibtex-entry]

  14. J. Passenger, D. Conlan, D. Hellier, C. Russ, S. Bauer, H. de Visser, and O. Salvado. Development of a realistic, patient free colonoscopy training environment using patient data. In ISQUA 2009, Dublin, Ireland, pages , October 2009. [bibtex-entry]

  15. J. Passenger, D. Conlan, H. de Visser, M. Cheng, O. Comas, J. Borda, C. Russ, J. Taylor, and O. Salvado. Harnessing the GPU for Surgical Training and Preoperative Planning. In NVIDIA GPU Developers Summit 2009, volume 1, San Jose, California, USA, pages 33 , October 2009. [bibtex-entry]

  16. David Raffelt, Jacques-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Spatial Normalization of High Angular Resolution Diffusion Imaging Data using Fiber Orientation Distributions. In Diffusion Workshop, London, United Kingdom, September 2009 . [bibtex-entry]

  17. D. Raffelt, D. Tournier, J. Fripp, N. Lepore, S. Crozier, A. Connelly, and O. Salvado. Non-Rigid Registration of Diffusion Weighted Images using Fibre Orientation Distributions. In Proceedings of ISMRM, Honolulu, Hawaii, April 18-24 2009 . [bibtex-entry]

  18. Parnesh Raniga, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Sebastien Ourselin, Christopher Rowe, Victor L Villemagne, and Olivier Salvado. Alzheimers disease detection using 11C-PiB with improved partial volume effect correction. In SPIE: Medical Imaging, Lake Buena Vista, FL, USA, 2009. SPIE. [bibtex-entry]

  19. P. Raniga, V. Villemagne, J. Fripp, P. Bourgeat, O. Acosta, C Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, O. Salvado, and C. Rowe. Correlation between white matter hyperintensities in MRI-FLAIR and 11C-PiB PET retention. A new potential for early identification of disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2009, Vienna, Austria, July 11-16 2009. Alzheimer's Association. [bibtex-entry]

  20. T. Reichl, J. Passenger, O. Acosta, S. Riek, and O. Salvado. Echtzeit-Ultraschallsimualtion Auf Grafik-Prozessoren Mit CUDA. In Bildverarbeitung fur die Medizin, Heidelberg, Germany, March 2009. [bibtex-entry]

  21. T. Reichl, J. Passenger, O. Acosta, S. Riek, and O. Salvado. Ultrasound goes GPU: real-time simulation using CUDA. In SPIE Medical Imaging 2009, volume 7261, Lake Buena Vista, Florida, USA, pages 726116-1--10 , February 2009. [bibtex-entry]

  22. Andrea Rueda, Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Michel Couprie, Eduardo Romero, and Olivier Salvado. Partial Volume Estimation orf Brain Cortex From MRI Using Topology-Corrected Segmentation. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 133-136, June 2009 . IEEE. [bibtex-entry]

  23. Q. Shi, L. Zhou, L. Cheng, and D. Schuurmans. Discriminative Maximum Margin Image Object Categorization with Exact Inference. In Proceedings of International Conference on Image and Graphics (ICIG), 2009. [bibtex-entry]

  24. C.J. Winberley, D. Xiao, D. Zahra, R. Shepherd, P. Berghofer , E Millard, O. Salvado, and M.C. Gregoire. Predicting tumor location when imaging early growth phase with PET/CT. In 2009 World Molecular Imaging Congress, Montreal, Canada, September 2009. [bibtex-entry]

  25. D. Xiao, P. Bourgeat, J. Fripp, O. Acosta, M.C. Gregoire , and O. Salvado. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. In Proc. of SPIE, Medical Imaging 2009: Image Processing, volume 7259, pages 72591G, 2009. [bibtex-entry]

  26. D. Xiao, J. Ribic, H. Butzkueven, K. Fang, T.J. Kilpatrick , G. F. Egan, and O. Salvado. Method for optic nerve intensity characterization in mice from Mn2+ enhanced MR images. In Proc. of SPIE, Medical Imaging 2009: Physics of Medical Imaging, volume 7258, pages 72584J, 2009. [bibtex-entry]

  27. D. Xiao, D. Zahra, P. Bourgeat, J. Fripp, P. Berghofer , O. Acosta, M.C. Gregoire, and O. Salvado. Hybrid non-rigid registration method for registering rat skeletons from micro-CT images. In SNM 2009 Annual Meeting, Toronto, Canada, June 2009. [bibtex-entry]

  28. M.A. Zuluaga, M. Orkisz, E.J.F. Delgado Leyton, V. Doré, A. Morales Pinzón, and M. Hernández Hoyos. Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images. In Midas Journal, London, 2009. [bibtex-entry]


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