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Publications of year 2009

Articles in journal or book chapters

  1. Oscar Acosta, Pierrick Bourgeat, Maria A. Zuluaga, Jurgen Fripp, Olivier Salvado, and Sebastien Ourselin. Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. Medical Image Analysis, 13(5):730-743, October 2009. 
    @Article{Acosta:Media:09,

 author = {Acosta, Oscar and Bourgeat, Pierrick and Zuluaga, Maria A. and Fripp, Jurgen and Salvado, Olivier and Ourselin, Sebastien},

 title = {Automated voxel-based {3D} cortical thickness measurement in a combined Lagrangian-Eulerian {PDE} approach using partial volume maps},

 month = {October},

 volume = {13},

 Number = {5},

 key = {doi:10.1016/j.media.2009.07.003},

 year = {2009},

 pages = {730-743},

 journal = {Medical Image Analysis},

 pdf = {http://dx.doi.org/10.1016/j.media.2009.07.003},

 optnumber = {4},

 publisher = {Elsevier}
 
}

  2. V. Doré and M. Cheriet. Robust NL-means filter with optimal pixel-wise smoothing parameter for statistical image denoising. IEEE Transactions on Signal Processing, 57(5):1703--1716, 2009. 
    @article{dore2009robust,

 title={{Robust NL-means filter with optimal pixel-wise smoothing parameter for statistical image denoising}},

 author={Dor{\'e}, V. and Cheriet, M.},

 journal={IEEE Transactions on Signal Processing},

 volume={57},

 number={5},

 pages={1703--1716},

 year={2009},

 publisher={Institute of Electrical and Electronics Engineers Inc., The}
 
}

  3. J. Dowling. Current and future prospects for optoelectronic retinal prostheses. Eye, 23:1999-2005, 2009. 
    @ARTICLE{Dowling2009,

 author = {Dowling, J.},

 title = {Current and future prospects for optoelectronic retinal prostheses},

 journal = {Eye},

 year = {2009},

 volume = {23},

 pages = {1999-2005},

 
}

  4. J. Dowling, M. Malaterre, P.B. Greer, and O. Salvado. Importing Contours from DICOM-RT structure sets. Insight Journal, July-December, 2009. 
    @ARTICLE{Dowling2009c,

 author = {Dowling, J. and Malaterre, M. and Greer, P.B. and Salvado, O.},

 title = {Importing Contours from {DICOM-RT} structure sets},

 journal = {Insight Journal},

 year = {2009},

 volume = {July-December},

 
}

  5. Grant J Steyer, Debashish Roy, Olivier Salvado, Meredith E Stone, and David L Wilson. Removal of out-of-plane fluorescence for single cell visualization and quantification in cryo-imaging. Annals of Biomedical Engineering, 37(8):1613--1628, August 2009.
    Note: PMID: 19513848.
    Abstract: We developed a cryo-imaging system, which alternates between sectioning (10-40 microm) and imaging bright field and fluorescence block-face image volumes with micron-scale-resolution. For applications requiring single-cell detection of fluorescently labeled cells anywhere in a mouse, we are developing software for reduction of out-of-plane fluorescence. In mouse experiments, we imaged {GFP-labeled} cancer and stem cells, and cell-sized fluorescent microspheres. To remove out-of-plane fluorescence, we used a simplified model of light-tissue interaction whereby the next-image was scaled, blurred, and subtracted from the current image. We estimated scaling and blurring parameters by minimizing an objective function on subtracted images. Tissue-specific attenuation parameters {[micro(T):} heart (267 +/- 47.6 cm(-1)), liver (218 +/- 27.1 cm(-1)), brain (161 +/- 27.4 cm(-1))] were found to be within the range of estimates in the literature. {"Next-image"} processing removed out-of-plane fluorescence equally well across multiple tissues (brain, kidney, liver, etc.), and analysis of 200 microsphere images gave 97 +/- 2\% reduction of out-of-plane fluorescence. Next-image processing greatly improved axial-resolution, enabled high quality {3D} volume renderings, and improved automated enumeration of single cells by up to 24\%.0 The method has been used to identify metastatic cancer sites, determine homing of stem cells to injury sites, and show microsphere distribution correlated with blood flow patterns. 

    @ARTICLE{steyer_removal_2009,

 author = {Grant J Steyer and Debashish Roy and Olivier Salvado and Meredith
 E Stone and David L Wilson},

 title = {Removal of out-of-plane fluorescence for single cell visualization
 and quantification in cryo-imaging},

 journal = {Annals of Biomedical Engineering},

 year = {2009},

 volume = {37},

 pages = {1613--1628},

 number = {8},

 month = "August",

 note = {{PMID:} 19513848},

 abstract = {We developed a cryo-imaging system, which alternates between sectioning
 (10-40 microm) and imaging bright field and fluorescence block-face
 image volumes with micron-scale-resolution. For applications requiring
 single-cell detection of fluorescently labeled cells anywhere in
 a mouse, we are developing software for reduction of out-of-plane
 fluorescence. In mouse experiments, we imaged {GFP-labeled} cancer
 and stem cells, and cell-sized fluorescent microspheres. To remove
 out-of-plane fluorescence, we used a simplified model of light-tissue
 interaction whereby the next-image was scaled, blurred, and subtracted
 from the current image. We estimated scaling and blurring parameters
 by minimizing an objective function on subtracted images. Tissue-specific
 attenuation parameters {[micro(T):} heart (267 +/- 47.6 cm(-1)),
 liver (218 +/- 27.1 cm(-1)), brain (161 +/- 27.4 cm(-1))] were found
 to be within the range of estimates in the literature. {"Next-image"}
 processing removed out-of-plane fluorescence equally well across
 multiple tissues (brain, kidney, liver, etc.), and analysis of 200
 microsphere images gave 97 +/- 2\% reduction of out-of-plane fluorescence.
 Next-image processing greatly improved axial-resolution, enabled
 high quality {3D} volume renderings, and improved automated enumeration
 of single cells by up to 24\%.0 The method has been used to identify
 metastatic cancer sites, determine homing of stem cells to injury
 sites, and show microsphere distribution correlated with blood flow
 patterns.},

 url = {http://www.ncbi.nlm.nih.gov/pubmed/19513848}
 
}

  6. Z. Taylor, O. Comas, M. Cheng, J. Passenger, D.J. Hawkes, D. Atkinson, and S. Ourselin. On Modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution. Medical Image Analysis, 13(2):234--244 , April 2009. 
    @Article{Taylor:MIA2008,

 Author = {Taylor, Z. and Comas, O. and Cheng, M. and Passenger, J. and Hawkes, D.J. and Atkinson, D. and Ourselin, S.},

 Title = {On Modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution},

 Journal = {Medical Image Analysis},

 Year = {2009},

 Volume = {13},

 Number = {2},

 Month = April,

 Pages = {234--244}
 
}

Conference articles

  1. Erik Bonner, Oscar Acosta, Jurgen Fripp, and Olivier Salvado. A Quantitative Comparison of Three Methods For Inflating Cortical Meshes. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 1338-1341, June 2009 . IEEE. 
    @InProceedings{Bonner:ISBI:09,

 Author = {Bonner, Erik and Acosta, Oscar and Fripp, Jurgen and Salvado, Olivier},

 Title = {A Quantitative Comparison of Three Methods For Inflating Cortical Meshes},

 BookTitle = {2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro},

 Address = {Boston, Massachusetts, USA},

 month = {June},

 optcrossref = {},

 opteditor = {},

 optkey = {},

 pages = {1338-1341},

 optnumber = {},

 optorganization = {},

 publisher = {IEEE},

 optseries = {},

 optvolume = {},

 pdf = {http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5193312&isnumber=5192959},

 year = 2009
 
}

  2. P. Bourgeat, V. Villemagne, J. Fripp, K. Pike, P. Raniga, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, C. Rowe, and O. Salvado. Relation between amyloid burden, brain atrophy and cognition in Alzheimer's disease. In 12th International Conference on Alzheimer's Disease, Vienna, Austria, July 11-16 2009. . 
    @InProceedings{Bourgeat:icad:09,

 Author = {Bourgeat, P. and Villemagne, V. and Fripp, J. and Pike, K. and Raniga, P. 
 and Acosta, O. and Szoeke, C. and Ourselin, S. and Ames, D. and Ellis, K. 
 and Masters, C. and Rowe, C. and Salvado, O.},

 Title = {Relation between amyloid burden, brain atrophy and cognition in Alzheimer's disease},

 booktitle = {12th International Conference on Alzheimer's Disease},

 year = {2009},

 address = {Vienna, Austria},

 month = {July 11-16},

 publisher = {}
 
}

  3. M. Cheng, S. Riek, M. Watson, S. Ourselin, J. Passenger, and O. Salvado. Pneumatic Haptic Interface Fuzzy controller for Simulation of Abdominal Palpations During Colonoscopy. In Proceedings of the Third Joint Eurohaptic Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems, pages 250-255, 2009. IEEE Press 2009. 
    @INPROCEEDINGS{Cheng2009_wh,

 author = {M. Cheng and S. Riek and M. Watson and S. Ourselin and J. Passenger and O. Salvado},

 title = {Pneumatic Haptic Interface Fuzzy controller for Simulation of Abdominal Palpations During Colonoscopy},

 booktitle={Proceedings of the Third Joint Eurohaptic Conference and Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems},

 volume={},

 pages={250-255},

 year={2009},

 publisher={IEEE Press 2009},

 
}

  4. M. Cheng, M. Watson, S. Riek, J. Passenger, and O. Salvado. The Development of a Haptic Device for Abdominal Palpations in Colonoscopy Simulation. In SimTecT Healthcare Simulation 2009, Brisbane, Australia, pages 63, September 2009. 
    @INPROCEEDINGS{Cheng2009_simtect,

 author = {M. Cheng and M. Watson and S. Riek and J. Passenger and O. Salvado},

 title = {The Development of a Haptic Device for Abdominal Palpations in Colonoscopy Simulation},

 booktitle={SimTecT Healthcare Simulation 2009},

 address = {Brisbane, Australia},

 month={September},

 year={2009},

 pages={63},

 
}

  5. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. B. Greer, J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, and O. Salvado. Nonrigid correction of interleaving artefacts in pelvic MRI. In Josien P. W. Pluim and Benoit M. Dawant, editors, Proceedings of SPIE Medical Imaging 2009: Image Processing, Florida, volume 7259, pages 72592P, 2009. SPIE. 
    @INPROCEEDINGS{Dowling2009a,

 author = {J. Dowling and P. Bourgeat and D. Raffelt and J. Fripp and P. B. Greer and J. Patterson and J. Denham and S. Gupta and C. Tang and P. Stanwell and S. Ourselin and O. Salvado},

 editor = {Josien P. W. Pluim and Benoit M. Dawant},

 booktitle = {Proceedings of SPIE Medical Imaging 2009: Image Processing, Florida},

 title = {Nonrigid correction of interleaving artefacts in pelvic MRI},

 publisher = {SPIE},

 year = {2009},

 volume = {7259},

 number = {1},

 pages = {72592P},

 location = {Lake Buena Vista, FL, USA},

 
}

  6. J. Dowling, P. Fripp, J. Greer, J. Patterson, S. Ourselin, and O. Salvado. Automatic atlas-based segmentation of the prostate: A MICCAI 2009 Prostate Segmentation Challenge entry. In Proceedings of 2009 MICCAI Prostate Segmentation Challenge (London, September 2009), 2009. 
    @INPROCEEDINGS{Dowling2009d,

 author = {Dowling, J. and Fripp, J. Greer, P. and Patterson, J. and Ourselin, S. and Salvado, O.},

 title = {Automatic atlas-based segmentation of the prostate: A {MICCAI} 2009 Prostate Segmentation Challenge entry},

 booktitle = {{P}roceedings of 2009 {MICCAI} Prostate Segmentation Challenge ({L}ondon, September 2009)},

 year = {2009},

 
}

  7. J. Dowling, A. Neubert, J. Fripp P. Bourgeat, and J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, P. B. Greer, and O. Salvado. Atlas-based, automatic segmentation of the pelvis for prostate radiotherapy planning. In In Proceedings of the Royal Australian and New Zealand College of Radiologists (RANZCR, Australian Institute of Radiography (AIR) and the Australasian College of Physical Scientists & Engineers in Medicine (ACPSEM) Combined Scientific Meeting published in the Journal Of Medical Imaging and Radiation Oncology, Vol 53(supplement 1), p. 65, 2009. 
    @INPROCEEDINGS{Dowling2009b,

 author = {J. Dowling and A. Neubert and J. Fripp P. Bourgeat and and J. Patterson and J. Denham and S. Gupta and C. Tang and P. Stanwell and S. Ourselin and P. B. Greer and O. Salvado},

 title = {Atlas-based, automatic segmentation of the pelvis for prostate radiotherapy planning},

 booktitle = {In Proceedings of the Royal Australian and New Zealand College of Radiologists ({RANZCR}, Australian Institute of Radiography (AIR) and the Australasian College of Physical Scientists & Engineers in Medicine (ACPSEM) Combined Scientific Meeting published in the Journal Of Medical Imaging and Radiation Oncology, Vol 53(supplement 1), p. 65},

 year = {2009},

 
}

  8. J. Fripp, P. Bourgeat, C. Engstrom, S. Ourselin, S. Crozier, and O. Salvado. Automated Segmentation of the Menisci From MR Images. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 510-513, June 2009. 
    @InProceedings{fripp:ISBI:2009,

 Title = {Automated Segmentation of the Menisci From MR Images},

 Author = {J. Fripp and P. Bourgeat and C. Engstrom and S. Ourselin and S. Crozier and O. Salvado},

 BookTitle = {2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro},

 Address = {Boston, Massachusetts, USA},

 month = {June},

 pages = {510-513},

 Year = {2009},

 
}

  9. J. Fripp, V. Villemagne, P. Bourgeat, P. Raniga, O. Acosta, C. Szoeke, D. Ames, K.A. Ellis, C.L. Masters, C. Rowe, and O. Salvado. Characterizing 11C PiB PET Images.. In 12th International Conference on Alzheimer's Disease, 2009.
    Note: Accepted. 
    @InProceedings{Fripp:icad:09,

 Author = {Fripp, J. and Villemagne, V. and Bourgeat, P. and Raniga, P. and Acosta, O. and Szoeke, C. and Ames, D. and Ellis, K.A. and Masters, C.L. and Rowe, C. and Salvado, O.},

 Title = {Characterizing 11C PiB PET Images.},

 booktitle = {12th International Conference on Alzheimer's Disease},

 year = {2009},

 note = {Accepted},

 
}

  10. J. Lambert, J. Dowling, O. Salvado, J. Patterson, F. Menk, and P. Greer. Investigation of bulk electron density planning and automatic bone segmentation on T2* MR Images for MR-Based prostate radiotherapy planning. In To be presented at the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) 8-12 November, 2009. 
    @INPROCEEDINGS{Lambert2009,

 author = {J. Lambert and J. Dowling and O. Salvado and J. Patterson and F. Menk and P. Greer },

 title = {Investigation of bulk electron density planning and automatic bone segmentation on {T2* MR I}mages for MR-Based prostate radiotherapy planning},

 booktitle = {To be presented at the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) {8-12} {N}ovember },

 year = {2009},

 
}

  11. Anthony Nguyen, Jason Dowling, Anthony Maeder, Phuong Nguyen, and Emma Brunton. Characterizing Image Properties for Digital Mammograms. In James R. Warren, editor, Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009), volume 97 of CRPIT, Wellington, New Zealand, pages 19-24, 2009. ACS. 
    @inproceedings{CRPITV97P19-24,

 Author = {Nguyen, Anthony and Dowling, Jason and Maeder, Anthony and Nguyen, Phuong and Brunton, Emma},

 Title = {Characterizing Image Properties for Digital Mammograms},

 BookTitle = {Third Australasian Workshop on Health Informatics and Knowledge Management (HIKM 2009)},

 Editor = {Warren, James R.},

 Series= {CRPIT},

 Address= {Wellington, New Zealand},

 Publisher = {ACS},

 Volume = {97},

 Pages = {19-24},

 Year = {2009} 
}

  12. J. Passenger, D. Conlan, D. Hellier, C. Russ, S. Bauer, H. de Visser, and O. Salvado. Development of a realistic, patient free colonoscopy training environment using patient data. In ISQUA 2009, Dublin, Ireland, pages , October 2009. 
    @InProceedings{Passenger:ISQUA2009,

 Author = {Passenger, J. and Conlan, D. and Hellier, D. and Russ, C. and Bauer, S. and de Visser, H. and Salvado, O.},

 Title = {Development of a realistic, patient free colonoscopy training environment using patient data},

 booktitle = {ISQUA 2009},

 address = {Dublin, Ireland},

 month = {October},

 year = 2009,

 pdf = {},

 volume = {},

 pages = {}
 
}

  13. J. Passenger, D. Conlan, H. de Visser, M. Cheng, O. Comas, J. Borda, C. Russ, J. Taylor, and O. Salvado. Harnessing the GPU for Surgical Training and Preoperative Planning. In NVIDIA GPU Developers Summit 2009, volume 1, San Jose, California, USA, pages 33 , October 2009. 
    @InProceedings{Passenger:NVIDIA2009,

 Author = {Passenger, J. and Conlan, D. and de Visser, H. and Cheng, M. and Comas, O. and Borda, J. and Russ, C. and Taylor, J. and Salvado, O.},

 Title = {Harnessing the GPU for Surgical Training and Preoperative Planning},

 booktitle = {NVIDIA GPU Developers Summit 2009},

 address = {San Jose, California, USA},

 month = {October},

 year = 2009,

 pdf = {},

 volume = {1},

 pages = {33}
 
}

  14. David Raffelt, Jacques-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Spatial Normalization of High Angular Resolution Diffusion Imaging Data using Fiber Orientation Distributions. In Diffusion Workshop, London, United Kingdom, September 2009 . 
    @inproceedings{raffelt_spatial_2009,

 address = {London, United Kingdom},

 title = {Spatial Normalization of High Angular Resolution Diffusion Imaging Data using Fiber Orientation Distributions},

 booktitle = {Diffusion Workshop},

 author = {David Raffelt and {Jacques-Donald} Tournier and Jurgen Fripp and Stuart Crozier and Alan Connelly and Olivier Salvado},

 month = {sep},

 year = {2009}
 
}

  15. D. Raffelt, D. Tournier, J. Fripp, N. Lepore, S. Crozier, A. Connelly, and O. Salvado. Non-Rigid Registration of Diffusion Weighted Images using Fibre Orientation Distributions. In Proceedings of ISMRM, Honolulu, Hawaii, April 18-24 2009 . 
    @INPROCEEDINGS{Raffelt2009,

 author = {Raffelt, D. and Tournier, D. and Fripp, J. and Lepore, N. and Crozier, S. and Connelly, A. and Salvado, O.},

 title = {Non-Rigid Registration of Diffusion Weighted Images using Fibre Orientation Distributions},

 booktitle = {Proceedings of ISMRM},

 year = {2009},

 Address = {Honolulu, Hawaii},

 Publisher = {},

 Note = {},

 month = {April 18-24},

 year = 2009
 
}

  16. Parnesh Raniga, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Sebastien Ourselin, Christopher Rowe, Victor L Villemagne, and Olivier Salvado. Alzheimers disease detection using 11C-PiB with improved partial volume effect correction. In SPIE: Medical Imaging, Lake Buena Vista, FL, USA, 2009. SPIE. 
    @InProceedings{Raniga:SPIE:2008,

 Author = {Parnesh Raniga and Pierrick Bourgeat and Jurgen Fripp and Oscar Acosta and Sebastien Ourselin and Christopher Rowe and Victor L Villemagne and Olivier Salvado},

 Title = {Alzheimers disease detection using 11C-PiB with improved partial volume effect correction},

 BookTitle = {SPIE: Medical Imaging},

 Address = {Lake Buena Vista, FL, USA},

 Publisher = {SPIE},

 Year = {2009},

 
}

  17. P. Raniga, V. Villemagne, J. Fripp, P. Bourgeat, O. Acosta, C Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, O. Salvado, and C. Rowe. Correlation between white matter hyperintensities in MRI-FLAIR and 11C-PiB PET retention. A new potential for early identification of disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2009, Vienna, Austria, July 11-16 2009. Alzheimer's Association. 
    @INPROCEEDINGS{Raniga:icad:2009,

 AUTHOR = {Raniga, P. and Villemagne, V. and Fripp, J. and Bourgeat, P. and Acosta, O. and Szoeke, C and Ourselin, S. and Ames, D. and Ellis, K. and Masters, C. and Salvado, O. and Rowe, C.},

 TITLE = {Correlation between white matter hyperintensities in MRI-FLAIR and 11C-PiB PET retention. A new potential for early identification of disease},

 BOOKTITLE = {Alzheimer's Association International Conference in Alzheimer's Disease 2009},

 YEAR = {2009},

 ADDRESS = {Vienna, Austria},

 MONTH = {July 11-16},

 PUBLISHER = {Alzheimer's Association},

 
}

  18. T. Reichl, J. Passenger, O. Acosta, S. Riek, and O. Salvado. Echtzeit-Ultraschallsimualtion Auf Grafik-Prozessoren Mit CUDA. In Bildverarbeitung fur die Medizin, Heidelberg, Germany, March 2009. 
    @InProceedings{Reichl:Bildverarbeitung2009,

 Author = {Reichl, T. and Passenger, J. and Acosta, O. and Riek, S. and Salvado, O.},

 Title = {Echtzeit-Ultraschallsimualtion Auf Grafik-Prozessoren Mit CUDA},

 booktitle = {Bildverarbeitung fur die Medizin},

 address = {Heidelberg, Germany},

 month = {March},

 year = 2009,

 pdf = {},

 
}

  19. T. Reichl, J. Passenger, O. Acosta, S. Riek, and O. Salvado. Ultrasound goes GPU: real-time simulation using CUDA. In SPIE Medical Imaging 2009, volume 7261, Lake Buena Vista, Florida, USA, pages 726116-1--10 , February 2009. 
    @InProceedings{Reichl:SPIE2009,

 Author = {Reichl, T. and Passenger, J. and Acosta, O. and Riek, S. and Salvado, O.},

 Title = {Ultrasound goes GPU: real-time simulation using CUDA},

 booktitle = {SPIE Medical Imaging 2009},

 address = {Lake Buena Vista, Florida, USA},

 month = {February},

 year = 2009,

 pdf = {},

 volume = {7261},

 pages = {726116-1--10}
 
}

  20. Andrea Rueda, Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Michel Couprie, Eduardo Romero, and Olivier Salvado. Partial Volume Estimation orf Brain Cortex From MRI Using Topology-Corrected Segmentation. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 133-136, June 2009 . IEEE. 
    @InProceedings{Rueda:ISBI:09,

 Author = {Rueda, Andrea and Acosta, Oscar and Bourgeat, Pierrick and Fripp, Jurgen and Dowson, Nicholas and Couprie, Michel and Romero, Eduardo and Salvado, Olivier},

 Title = {Partial Volume Estimation orf Brain Cortex From {MRI} Using Topology-Corrected Segmentation},

 BookTitle = {2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro},

 Address = {Boston, Massachusetts, USA},

 month = {June},

 optcrossref = {},

 opteditor = {},

 optkey = {},

 pages = {133-136},

 optnumber = {},

 optorganization = {},

 publisher = {IEEE},

 optseries = {},

 optvolume = {},

 pdf = {http://e-hrc.net/pubs/papers/abstract/ieee_biomed_imaging_2007_888-891.html},

 year = 2009
 
}

  21. C.J. Winberley, D. Xiao, D. Zahra, R. Shepherd, P. Berghofer , E Millard, O. Salvado, and M.C. Gregoire. Predicting tumor location when imaging early growth phase with PET/CT. In 2009 World Molecular Imaging Congress, Montreal, Canada, September 2009. 
    @INPROCEEDINGS{Winberley2009,

 author = {C.J. Winberley and D. Xiao and D. Zahra and R. Shepherd and P. Berghofer
 and E Millard and O. Salvado and M.C. Gregoire},

 title = {Predicting tumor location when imaging early growth phase with PET/CT},

 booktitle = {2009 World Molecular Imaging Congress},

 year = {2009},

 address = {Montreal, Canada},

 month = {September},

 
}

  22. D. Xiao, P. Bourgeat, J. Fripp, O. Acosta, M.C. Gregoire , and O. Salvado. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. In Proc. of SPIE, Medical Imaging 2009: Image Processing, volume 7259, pages 72591G, 2009. 
    @INPROCEEDINGS{DiXiaoC016,

 author = {D. Xiao and P. Bourgeat and J. Fripp and O. Acosta and M.C. Gregoire
 and O. Salvado},

 title = {Non-rigid registration of small animal skeletons from micro-CT using
 3D shape context},

 booktitle = {Proc. of SPIE, Medical Imaging 2009: Image Processing},

 year = {2009},

 volume = {7259},

 pages = {72591G},

 
}

  23. D. Xiao, J. Ribic, H. Butzkueven, K. Fang, T.J. Kilpatrick , G. F. Egan, and O. Salvado. Method for optic nerve intensity characterization in mice from Mn2+ enhanced MR images. In Proc. of SPIE, Medical Imaging 2009: Physics of Medical Imaging, volume 7258, pages 72584J, 2009. 
    @INPROCEEDINGS{DiXiaoC015,

 author = {D. Xiao and J. Ribic and H. Butzkueven and K. Fang and T.J. Kilpatrick
 and G. F. Egan and O. Salvado},

 title = {Method for optic nerve intensity characterization in mice from Mn2+
 enhanced MR images},

 booktitle = {Proc. of SPIE, Medical Imaging 2009: Physics of Medical Imaging},

 year = {2009},

 volume = {7258},

 pages = {72584J},

 
}

  24. D. Xiao, D. Zahra, P. Bourgeat, J. Fripp, P. Berghofer , O. Acosta, M.C. Gregoire, and O. Salvado. Hybrid non-rigid registration method for registering rat skeletons from micro-CT images. In SNM 2009 Annual Meeting, Toronto, Canada, June 2009. 
    @INPROCEEDINGS{Xiao2009,

 author = {D. Xiao and D. Zahra and P. Bourgeat and J. Fripp and P. Berghofer
 and O. Acosta and M.C. Gregoire and O. Salvado},

 title = {Hybrid non-rigid registration method for registering rat skeletons
 from micro-CT images},

 booktitle = {SNM 2009 Annual Meeting},

 year = {2009},

 address = {Toronto, Canada},

 month = {June},

 
}

  25. M.A. Zuluaga, M. Orkisz, E.J.F. Delgado Leyton, V. Doré, A. Morales Pinzon, and M. Hernandez Hoyos. Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images. In Midas Journal, London, 2009. 
    @INPROCEEDINGS{ZULU09b,

 author={Zuluaga, M.A. and Orkisz, M. and Delgado Leyton, E.J.F. and Dor{\'e}, V. and Morales Pinz{\'}on, A. and Hern{\'}andez Hoyos, M.},

 title={Adaptations of MARACAS algorithm to the segmentation of the carotid bifurcation and stenosis quantification in CTA images},

 conference={MICCAI Workshop - 3D Segmentation in the Clinic: A Grand Challenge III},

 year=2009,

 address={London},

 booktitle={Midas Journal},

 url={http://hdl.handle.net/10380/3102}
 
}


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