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Publications of year 2008

Articles in journal or book chapters

  1. J. Dowling, W. Boles, and A. Maeder. Mechatronics and Machine Vision in Practice, chapter Visual Prostheses for the Blind: A Framework for Information Presentation, pages 275-287. Springer-Verlag, 2008. [bibtex-entry]

  2. David Hansen, Mohan Karunanithi, Michael Lawley, Anthony Maeder, Simon McBride, Gary Morgan, Chaoyi Pang, Olivier Salvado, and Antti Sarela. Advanced Web and NetworkTechnologies, and Applications, chapter Improving the Use, Analysis and Integration of Patient Health Data, pages 74-84. Springer Berlin - Heidelberg, 2008. [bibtex-entry]

  3. Shekhar S. Chandra, Imants Svalbe, and Jean-Pierre Guédon. An exact, non-iterative Mojette inversion technique utilising ghosts. In Lecture Notes in Computer Science (LNCS), volume 4992, pages 401-412. Springer Berlin / Heidelberg, 2008. [bibtex-entry]

  4. Ryad Chellali, Nicolas Mollet, Cedric Dumas, and Geoffery Subileau. SyTroN: Virtual Desk for Collaborative, Tele-operated and Tele-learning System with Real Devices. In Zhigeng Pan, Xiaopeng Zhang, Abdennour Rhalibi, Woontack Woo, and Yi Li, editors, Technologies for E-Learning and Digital Entertainment, volume 5093, pages 153--161 . Springer Berlin Heidelberg, Berlin, Heidelberg, 2008. [bibtex-entry]

  5. M. Cheng, Z. Taylor, and S. Ourselin. Towards anatomical modelling of multiple organs interaction using real time GPU based nonlinear elasticity. Studies in health technology and informatics, 132:77, 2008. [bibtex-entry]

  6. N. Dowson and R. Bowden. Mutual Information for Lucas-Kanade tracking (MILK): An inverse compositional formulation. IEEE Trans. Pattern Analysis and Machine Intelligence, 30(1):180--185, January 2008. [bibtex-entry]

  7. N. Dowson, T. Kadir, and R. Bowden. Estimating the joint statistics of images using Non-Parametric Windows with application to registration using Mutual Information. IEEE Trans. Pattern Analysis and Machine Intelligence, 30(10):1841--1857, October 2008. [bibtex-entry]

  8. J. Fripp, P. Bourgeat, O. Acosta, P. Raniga, M. Modat, K.E. Pike, G. Jones, G. O'Keefe, C.L. Masters, D. Ames, K.A. Ellis, P. Maruff, J. Currie, V.L. Villemagne, C.C. Rowe, O. Salvado, and S. Ourselin. Appearance Modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairement and healthy aging. NeuroImage, 43(3):430-439, Novembre 2008. [bibtex-entry]

  9. J.P. Little, H. de Visser, M.J. Pearcy, and C.J. Adam. Are coupled rotations in the lumbar spine largely due to the osseo-ligamentous anatomy? - a modeling study. Computer Methods in Biomechanics and Biomedical Engineering, 11(1):95-103, 2008. [bibtex-entry]

  10. Mike Nguyen, Olivier Salvado, Debashish Roy, Grant Steyer , Meredith E. Stone, Robert Hoffman, and David L Wilson. Ex Vivo Characterization of Human Atherosclerotic Iliac Plaque Components using Cryo-Imaging. Journal of Microscopy, 232(3), December 2008. [Abstract] [bibtex-entry]

  11. P. Raniga, P. Bourgeat, J. Fripp, O. Acosta, V. Villemagne, C. Rowe, C. Masters, G. Jones, G. O'Keefe, O. Salvado, and S. Ourselin. Automated [11]C-PiB Standardized Uptake Value Ratio. Academic Radiology, 15(11):1376-1389, November 2008. [bibtex-entry]

  12. Z. Taylor, M. Cheng, and S. Ourselin. High-speed nonlinear finite element analysis for surgical simulation using graphics processing units. IEEE Transactions on Medical Imaging, 27(5):650-663, 2008 . [bibtex-entry]

  13. L. Wang, K.L. Chan, P. Xue, and L. Zhou. A Kernel-Induced Space Selection Approach to Model Selection in KLDA. IEEE Transactions on Neural Networks, 19(12):2116--2131, 2008. [bibtex-entry]

  14. K.G. Yan, Y. Yu, D. Xiao, T. Podder, I. Bruzovic and Y.D. Hu, and W.S. Ng. Flexible Needle-Tissue Interaction Modeling using Depth-varying Mean Parameter. The HKIE Transactions, 15(4), December 2008. [bibtex-entry]

Conference articles

  1. Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Erik Bonner, Sebastien Ourselin, and Olivier Salvado. Automatic delineation of sulci and improved partial volume classification for accurate 3D cortical thickness estimation from MR. In 11th International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI 2008), LNCS, New York, USA, pages 253-261, September 2008 . SPRINGER. [bibtex-entry]

  2. Oscar Acosta, Hans Frimmel, Aaron Fenster, Olivier Salvado, and Sebastien Ourselin. Pyramidal Flux in an Anisotropic Diffusion Scheme for Enhancing Structures in 3D Images. In Proceedings of SPIE: Image Processing, volume 6914, San Diego, USA, pages 12p, February 2008 . [bibtex-entry]

  3. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. New cortical thickness estimation method for atrophy characterization of Alzheimer's disease patients. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. . [bibtex-entry]

  4. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, O. Salvado, and S. Ourselin. Cortical thickness estimation of Alzheimer's disease patients: Application to the Australian Imaging Biomarkers and Lifestyle (AIBL) study. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping . [bibtex-entry]

  5. P. Bourgeat, O. Acosta, M. Zuluaga, J. Fripp, O. Salvado, and S. Ourselin. Improved cortical thickness measurement from MR images using partial volume estimation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 205-208 , April 2008. IEEE. [bibtex-entry]

  6. S. S. Chandra and I. Svalbe. A method for removing cyclic artefacts in discrete tomography using Latin squares. In Proceedings of the 19th International Conference on Pattern Recognition, pages 1-4, Dec. 2008. [Abstract] [bibtex-entry]

  7. Amine Chellali, Isabelle Milleville-Pennel, and Cédric Dumas. Elaboration of a common frame of reference in collaborative virtual environments. In Proceedings of the 15th European conference on Cognitive ergonomics: the ergonomics of cool interaction, ECCE '08, Funchal, Portugal, pages 21:1–21:8 , 2008. ACM.
    Note: ACM ID: 1473045. [Abstract] [bibtex-entry]

  8. Amine Chellali, Isabelle Milleville-Pennel, and Cedric Dumas. Influence des systèmes de référence sur les profils de collaboration dans un environnement virtuel. In Proceedings of the 20th International Conference of the Association Francophone d'Interaction Homme-Machine, IHM '08, Metz, France, pages 63–70 , 2008. ACM.
    Note: ACM ID: 1512727. [Abstract] [bibtex-entry]

  9. O. Comas, Z. Taylor, J. Allard, S. Ourselin, S. Cotin, and J. Passenger. Efficient nonlinear FEM for soft tissue modelling and its GPU implementation within the open source framework SOFA. In Proceedings of ISBMS 2008, London, United Kingdom , pages 28-39, July 7-8 2008. [bibtex-entry]

  10. D. Conlan, J. Passenger, O. Comas, and O. Salvado. Implementing a GPU based Spatial Hash Generator. In ICT Centre Conference 2008, Sydney, Australia , 2008. [bibtex-entry]

  11. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. Greer, J. Patterson, J. Denham, P. Stanwell, S. Ourselin, and O. Salvado. Fast automatic correction of non-rigid motion artefacts in MRI of the abdomen. In Proceedings of MICCAI Prostate Workshop (New York, September 2008), 2008. [bibtex-entry]

  12. J. Dowling, B. Planitz, A. Maeder, J. Du, B. Pham, C. Boyd, S. Chen, A. Bradley, and S. Crozier. A comparison of DCT and DWT block based watermarking on medical image quality. In Y.Q. Shi, H.-J. Kim, and S. Katzenbeisser, editors, Proceedings of the 6th International Workshop on Digital Image Watermarking ( IWDW), Guangzhou, China, December 2007, volume LNCS 5041, pages 454-466, 2008. Springer-Verlag . [bibtex-entry]

  13. K.A. Ellis, V.L. Villemagne, D. Ames, N. Lenzo, K.E. Pike , G. O'Keefe, H. Tochon-Danguy, R. Price, G. Jones, M. Rimajova , P. Bourgeat, P. Raniga, J. Fripp, O. Acosta, O. Salvado , R. Martins, C.L. Masters, and C.C. Rowe. The Australian biomarker, imaging and lifestyle study: Preliminary PiB results. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. . [bibtex-entry]

  14. S.G.H. Erbou, S. Darkner, J. Fripp, S. Ourselin, and B.K. Ersboll. ESTIMATION OF SHAPE MODEL PARAMETERS FOR 3D SURFACES. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 624-627, May 2008 . IEEE. [bibtex-entry]

  15. J. Fripp, P. Bourgeat, O. Acosta, G. Jones, V. Villemagne, S. Ourselin, C. Rowe, and O. Salvado. Generative atlases and atlas selection for C11-PIB PET-PET registration of Elderly, Mild cognitive impaired and Alzheimer disease patients. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 1155-1158, May 2008 . IEEE. [bibtex-entry]

  16. J. Fripp, P. Bourgeat, P. Raniga, O. Acosta, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. Modeling the appearance variation of 11C-PiB PET images.. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. [bibtex-entry]

  17. J. Fripp, P. Bourgeat, P. Raniga, O Acosta, V. Villegmane, G. O'keefe, G. Jones, C. Rowe, S. Ourselin, and O. Salvado. MR-less high dimensional spatial normalization of 11C PiB PET images on a population of Elderly, Mild cognitive impaired and Alzheimer disease patients. In 11th International Conference on Medical Image Computing and Computer Assisted Intervention, pages 442-449 , 2008. [bibtex-entry]

  18. J. Fripp, V. Jurcak, R. Holt, S. Ourselin, C. Engstom, and S. Crozier. Reproducibility of Automatic Quantitative Analysis of the Articular Cartilages from MEDIC and weDESS Magnetic Resonance Images of the Knee at 1.5T. In , Toronto, May 2008 .
    Note: Accepted for publication. [bibtex-entry]

  19. D Hellier, E Samur, J Passenger, U Spälter, H Frimmel, M Appleyard, H Bleuler, and S Ourselin. A modular simulation framework for colonoscopy using a new haptic device.. In James D. Westwood, Randy S. Haluck, Helene M. Hoffman, Greg T. Mogel, Roger Phillips, Richard A. Robb, and Kirby G. Vosburgh, editors, Medicine Meets Virtual Reality 16 - parallel, combinatorial, convergent: NextMed by Design, volume 132 of Studies in Health Technology and Informatics, pages 165--70, 2008. IOS Press . [bibtex-entry]

  20. P. J. Hudson, R. Robert, A. Rembach, K.L. Wark, S. Ourselin , O. Salvado, K.A. Ellis, D. Ames, C.L. Masters, A. Bush, R.N. Martins, and C.C. Rowe. Early stage Alzheimer's disease diagnosis in a unique progressing cohort by correlation of Cognition, Neuroimaging and blood biomarkers (the AIBL Cluster Study). In Keystone, editor, Keystone Symposia on Alzheimer's disease, 04 2008. Keystone Symposia. [bibtex-entry]

  21. V. Jurcak, J. Fripp, C. Engstrom, D. Walker, O. Salvado, S. Ourselin, and S. Crozier. ATLAS BASED AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE USING NON-RIGID REGISTRATION ON MAGNETIC RESONANCE IMAGES OF THE THORACOLUMBAR REGION. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 113-116, May 2008 . IEEE. [bibtex-entry]

  22. V. Jurcak, J. Fripp, E. Engstrom, D. Walker, O Salvado, S. Ourselin, and S Crozier. Automated segmentation of the quadratus lumborum muscle from Magnetic Resonance Images using a hybrid atlas based - Geodesic active contour scheme. In EMBC, 2008. [bibtex-entry]

  23. J. Lambert, P. Greer, J. Patterson, J. Dowling, O. Salvado , and F. Menk. Bulk electron density treatment planning for MRI-based prostate radiotherapy. In In Proceedings of the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) 2008 pubolished in the Journal of Australasian College of Physical Scientists and Engineers in Medicine, 31(4), p. 353, 2008. [bibtex-entry]

  24. A. Maeder, J. Dowling, A. Nguyen, E. Brunton, and P Nguyen. Assuring Authenticity of Digital Mammograms by Image Watermarking. In 9th International Workshop on Digital Mammography (IWDM 2008), Springer LNCS 5116, pages 204-211, 2008. [bibtex-entry]

  25. Pascal Maillard, Lionel Flaction, Evren Samur, David Hellier, Josh Passenger, and Hannes Bleuler. Instrumentation of a Clinical Colonoscope for Surgical Simulation. In 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 70-73 , 2008. [bibtex-entry]

  26. J. Passenger, O. Acosta, H. de Visser, S. Bauer, C. Russ, and S. Ourselin. Texture Coordinate Generation of Colonic Surface Meshes for Surgical Simulation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 640-643 , April 2008. IEEE. [bibtex-entry]

  27. J. Passenger, H. de Visser, O. Comas, D. Conlan, C. Russ, S. Riek, M. Watson, and O. Salvado. GPU Programming - New Frontiers for Surgical Simulator. In SimTecT Healthcare Simulation 2008, Brisbane, Australia, pages 35 , September 2008. [bibtex-entry]

  28. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, S. Ourselin, C. Masters, D. Ames, P. Hudson, C. Rowe, V. Villemagne, and O. Salvado. Optimization Of Partial Volume Correction Strategies for [11]C-PiB Quantification. In Alzheimer's Association International Conference in Alzheimer's Disease 2008, Chicago, IL, July 26-31 2008. Alzheimer's Association. [bibtex-entry]

  29. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, V. Villemagne, C. Rowe, C. Masters, O. Salvado, and S. Ourselin. Automated Standardized Uptake Value Ratio of 11C-PIB PET analysis in Alzheimers disease. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping.
    Note: CD-ROM paper number 345 W-AM . [bibtex-entry]

  30. C. Russ, J. Passenger, S. Riek, D. Hewett, M. Watson, and O. Salvado. Real-time Photorealistic Rendering Techniques for Surgical Simulation. In SimTecT Healthcare Simulation 2008, Brisbane, Australia, pages 47--48 , September 2008. [bibtex-entry]

  31. Evren Samur, Lionel Flaction, Ulrich Spaelter, Hannes Bleuler , David Hellier, and Sebastien Ourselin. A Haptic Interface with Motor-Brake System for Colonoscopy Simulation. In Haptic Interfaces for Virtual Environment and Teleoperator Systems, 2007. HAPTICS 2007. Symposium on, pages 477-478 , 2008. [bibtex-entry]

  32. Grant Steyer, David L. Wilson, Debashish Roy, Olivier Salvado , and Meredith E. Heinzel Stone. Cryo-imaging of fluorescently labeled single cells in a mouse. In SPIE, editor, SPIE'08, volume 7262 of Biomedical Applications in Molecular, Structural, and Functional Imaging, Lake Buena Vista, FL United States, February 2008. SPIE. [Abstract] [bibtex-entry]

  33. Z.A. Taylor, O. Comas, M. Cheng, J. Passenger, D.J. Hawkes, D. Atkinson, and S. Ourselin. Modelling anisotropic viscoelasticity for real-time soft tissue simulation. In Proceedings of MICCAI 2008, New York, USA , pages 703-710, September 6-10 2008. [bibtex-entry]

  34. L. Wang, L. Zhou, and C. Shen. A Fast Algorithm for Creating a Compact and Discriminative Visual Codebook. In Proceedings of European Conference on Computer Vision (ECCV), pages 719--732, 2008. [bibtex-entry]

  35. L. Zhou, R. Hartley, L. Wang, P. Lieby, and N. Barnes. Regularized Discriminative Direction for Shape Difference Analysis. In Proceedings of International Conference on Medical Image Computing And Computer Assisted Intervention (MICCAI), pages 628--635, 2008. [bibtex-entry]

  36. Maria Zuluaga, Oscar Acosta, Pierrick Bourgeat, Olivier Salvado, Marcela Hernandez, and Sebastien Ourselin. Cortical Thickness Measurement from Magnetic Resonance Images Using Partial Volume Estimation. In Proceedings of SPIE: Image Processing, volume 6914, San Diego, USA, pages 8p, February 2008 . [bibtex-entry]

  37. H. de Visser, O. Comas, D. Conlan, S. Ourselin, J. Passenger, and O. Salvado. Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model. In Proceedings of ISBMS 2008, London, UK, July 2008. [bibtex-entry]


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