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Publications of year 2008

Articles in journal or book chapters

  1. J. Dowling, W. Boles, and A. Maeder. Mechatronics and Machine Vision in Practice, chapter Visual Prostheses for the Blind: A Framework for Information Presentation, pages 275-287. Springer-Verlag, 2008.
    @INBOOK{Dowling2008Mech,
    
     chapter = {Visual Prostheses for the Blind: A Framework for Information Presentation},
    
     pages = {275-287},
    
     title = {Mechatronics and Machine Vision in Practice},
    
     publisher = {Springer-Verlag},
    
     year = {2008},
    
     editor = {Billingsley, J. and Bradbeer, R.},
    
     author = {Dowling, J. and Boles, W. and Maeder, A.}
     
    }
    

  2. David Hansen, Mohan Karunanithi, Michael Lawley, Anthony Maeder, Simon McBride, Gary Morgan, Chaoyi Pang, Olivier Salvado, and Antti Sarela. Advanced Web and NetworkTechnologies, and Applications, chapter Improving the Use, Analysis and Integration of Patient Health Data, pages 74-84. Springer Berlin - Heidelberg, 2008.
    @INBOOK{salvado2008a,
    
     chapter = {Improving the Use, Analysis and Integration of Patient Health Data},
    
     pages = {74-84},
    
     title = {Advanced Web and NetworkTechnologies, and Applications},
    
     publisher = {Springer Berlin - Heidelberg},
    
     year = {2008},
    
     author = {David Hansen and Mohan Karunanithi and Michael Lawley and Anthony
     Maeder and Simon McBride and Gary Morgan and Chaoyi Pang and Olivier
     Salvado and Antti Sarela},
    
     url = {http://www.springerlink.com/content/c08558658043h014}
     
    }
    

  3. Shekhar S. Chandra, Imants Svalbe, and Jean-Pierre Guédon. An exact, non-iterative Mojette inversion technique utilising ghosts. In Lecture Notes in Computer Science (LNCS), volume 4992, pages 401-412. Springer Berlin / Heidelberg, 2008.
    @INCOLLECTION{Chandra2008,
    author = {Shekhar S. Chandra and Imants Svalbe and Jean-Pierre Gu\'edon},
    title = {An exact, non-iterative {M}ojette inversion technique utilising ghosts},
    booktitle = {Lecture Notes in Computer Science (LNCS)},
    publisher = {Springer Berlin / Heidelberg},
    year = {2008},
    volume = {4992},
    pages = {401-412},
    journal = {Lecture Notes in Computer Science (LNCS)} 
    }
    

  4. Ryad Chellali, Nicolas Mollet, Cedric Dumas, and Geoffery Subileau. SyTroN: Virtual Desk for Collaborative, Tele-operated and Tele-learning System with Real Devices. In Zhigeng Pan, Xiaopeng Zhang, Abdennour Rhalibi, Woontack Woo, and Yi Li, editors, Technologies for E-Learning and Digital Entertainment, volume 5093, pages 153--161 . Springer Berlin Heidelberg, Berlin, Heidelberg, 2008.
    @incollection{dumas:sytron:2008,
    
     address = {Berlin, Heidelberg},
    
     title = {{SyTroN:} Virtual Desk for Collaborative, Tele-operated and Tele-learning System with Real Devices},
    
     volume = {5093},
    
     isbn = {978-3-540-69734-3},
    
     url = {http://www.springerlink.com/content/2xx7578807728877/},
    
     booktitle = {Technologies for {E-Learning} and Digital Entertainment},
    
     publisher = {Springer Berlin Heidelberg},
    
     author = {Chellali, Ryad and Mollet, Nicolas and Dumas, Cedric and Subileau, Geoffery},
    
     editor = {Pan, Zhigeng and Zhang, Xiaopeng and Rhalibi, Abdennour and Woo, Woontack and Li, Yi},
    
     year = {2008},
    
     pages = {153--161}
     
    }
    

  5. M. Cheng, Z. Taylor, and S. Ourselin. Towards anatomical modelling of multiple organs interaction using real time GPU based nonlinear elasticity. Studies in health technology and informatics, 132:77, 2008.
    @ARTICLE{Cheng2008_mmvr,
    
     author = {M. Cheng and Z. Taylor and S. Ourselin},
    
     title = {Towards anatomical modelling of multiple organs interaction using real time GPU based nonlinear elasticity},
    
     journal={Studies in health technology and informatics},
    
     volume={132},
    
     pages={77},
    
     year={2008},
    
     publisher={Stud Health Technol Inform},
    
     
    }
    

  6. N. Dowson and R. Bowden. Mutual Information for Lucas-Kanade tracking (MILK): An inverse compositional formulation. IEEE Trans. Pattern Analysis and Machine Intelligence, 30(1):180--185, January 2008.
    @Article{dowson08mutual,
    
     author = {Dowson, N. and Bowden, R.},
    
     title = {Mutual Information for Lucas-Kanade tracking (MILK):
     An inverse compositional formulation},
    
     journal = {IEEE Trans. Pattern Analysis and Machine
     Intelligence},
    
     year = {2008},
    
     volume = {30},
    
     number = {1},
    
     pages = {180--185},
    
     month = {January},
    
     
    }
    

  7. N. Dowson, T. Kadir, and R. Bowden. Estimating the joint statistics of images using Non-Parametric Windows with application to registration using Mutual Information. IEEE Trans. Pattern Analysis and Machine Intelligence, 30(10):1841--1857, October 2008.
    @Article{dowson08estimating,
    
     author = {Dowson, N. and Kadir, T. and Bowden, R.},
    
     title = {Estimating the joint statistics of images using
     Non-Parametric Windows with application to
     registration using Mutual Information},
    
     journal = {IEEE Trans. Pattern Analysis and Machine
     Intelligence},
    
     year = {2008},
    
     volume = {30},
    
     number = {10},
    
     pages = {1841--1857},
    
     month = {October},
    
     
    }
    

  8. J. Fripp, P. Bourgeat, O. Acosta, P. Raniga, M. Modat, K.E. Pike, G. Jones, G. O'Keefe, C.L. Masters, D. Ames, K.A. Ellis, P. Maruff, J. Currie, V.L. Villemagne, C.C. Rowe, O. Salvado, and S. Ourselin. Appearance Modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairement and healthy aging. NeuroImage, 43(3):430-439, Novembre 2008.
    @Article{Fripp2008:NeuroImage1,
    
     Author = {J. Fripp and P. Bourgeat and O. Acosta and P. Raniga and M. Modat and K.E. Pike and G. Jones and G. O'Keefe and C.L. Masters and D. Ames and K.A. Ellis and P. Maruff and J. Currie and V.L. Villemagne and C.C. Rowe and O. Salvado and S. Ourselin},
    
     Title = {Appearance Modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairement and healthy aging},
    
     Journal = {NeuroImage},
    
     Year = {2008},
    
     Volume = {43},
    
     Number = {3},
    
     Month = {Novembre},
    
     Pages = {430-439},
    
     url = {http://www.sciencedirect.com/science/article/B6WNP-4T6CTN2-1/2/2e15fef102f3120bf4f968e452d416a5}
     
    }
    

  9. J.P. Little, H. de Visser, M.J. Pearcy, and C.J. Adam. Are coupled rotations in the lumbar spine largely due to the osseo-ligamentous anatomy? - a modeling study. Computer Methods in Biomechanics and Biomedical Engineering, 11(1):95-103, 2008.
    @Article{LittleDeVisser:cmbbe:08,
    author = {Little, J.P. and de Visser, H. and Pearcy, M.J. and Adam, C.J.},
    title = {Are coupled rotations in the lumbar spine largely due to the osseo-ligamentous anatomy? - a modeling study},
    journal = {Computer Methods in Biomechanics and Biomedical Engineering},
    volume = {11},
    number = {1},
    year = {2008},
    pages = {95-103} 
    }
    

  10. Mike Nguyen, Olivier Salvado, Debashish Roy, Grant Steyer , Meredith E. Stone, Robert Hoffman, and David L Wilson. Ex Vivo Characterization of Human Atherosclerotic Iliac Plaque Components using Cryo-Imaging. Journal of Microscopy, 232(3), December 2008.
    Abstract: We characterized atherosclerotic plaque components with a novel cryo-imaging system in lieu of standard histological methods commonly used for imaging validation and research endpoints. We aim to accurately identify plaque tissue types from fresh cadaver specimens rapidly (less than 5 hours) in three dimensions for large specimens (up to 4 cm vessel segments). A single-blind validation study was designed to determine sensitivity, specificity, and inter-rater agreement (Fleiss’ Kappa) of cryo-imaging tissue types with histology as the gold standard. Six naïve human raters identified 344 tissue type samples in 36 cryo-image sets after being trained. Tissue type sensitivities are as follows: greater than 90-1.123173or adventitia, media-related, smooth muscle cell ingrowth, external elastic lamina, internal elastic lamina, fibrosis, dense calcification, and hemorrhage; greater than 80-1.113869or lipid and light calcification; and greater than 50 0.000000or cholesterol clefts. Specificities were greater than 95-1.113888or all tissue types. The results demonstrate convincingly that cryo-imaging can be used to accurately identify most tissue types. If the cryo-imaging data are entered into visualization software, 3D renderings of the plaque can be generated to visualize and quantify plaque components.

    @ARTICLE{nguyen_cryoimaging_2007,
    
     author = {Mike Nguyen and Olivier Salvado and Debashish Roy and Grant Steyer
     and Meredith E. Stone and Robert Hoffman and David L Wilson},
    
     title = {Ex Vivo Characterization of Human Atherosclerotic Iliac Plaque Components
     using Cryo-Imaging},
    
     journal = {Journal of Microscopy},
    
     year = {2008},
    
     volume = {232},
    
     number = {3},
    
     month = "December",
    
     abstract = {We characterized atherosclerotic plaque components with a novel cryo-imaging
     system in lieu of standard histological methods commonly used for
     imaging validation and research endpoints. We aim to accurately identify
     plaque tissue types from fresh cadaver specimens rapidly (less than
     5 hours) in three dimensions for large specimens (up to 4 cm vessel
     segments). A single-blind validation study was designed to determine
     sensitivity, specificity, and inter-rater agreement (Fleiss’ Kappa)
     of cryo-imaging tissue types with histology as the gold standard.
     Six naïve human raters identified 344 tissue type samples in 36 cryo-image
     sets after being trained. Tissue type sensitivities are as follows:
     greater than 90-1.123173or adventitia, media-related, smooth muscle cell
     ingrowth, external elastic lamina, internal elastic lamina, fibrosis,
     dense calcification, and hemorrhage; greater than 80-1.113869or lipid and
     light calcification; and greater than 50 0.000000or cholesterol clefts.
     Specificities were greater than 95-1.113888or all tissue types. The results
     demonstrate convincingly that cryo-imaging can be used to accurately
     identify most tissue types. If the cryo-imaging data are entered
     into visualization software, 3D renderings of the plaque can be generated
     to visualize and quantify plaque components.},
    
     issn = {1079-5642}
     
    }
    

  11. P. Raniga, P. Bourgeat, J. Fripp, O. Acosta, V. Villemagne, C. Rowe, C. Masters, G. Jones, G. O'Keefe, O. Salvado, and S. Ourselin. Automated [11]C-PiB Standardized Uptake Value Ratio. Academic Radiology, 15(11):1376-1389, November 2008.
    @Article{Raniga2008:ARAD,
    
     Author = {Raniga, P. and Bourgeat, P. and Fripp, J. and Acosta, O. and Villemagne, V. and Rowe, C. and Masters, C. and Jones, G. and O'Keefe, G. and Salvado, O. and Ourselin, S.},
    
     Title = {Automated [11]C-PiB Standardized Uptake Value Ratio},
    
     Journal = {Academic Radiology},
    
     Year = {2008},
    
     Volume = {15},
    
     Number = {11},
    
     Month = {Nov},
    
     Pages = {1376-1389},
    
     url = {http://dx.doi.org/10.1016/j.acra.2008.07.006},
    
     
    }
    

  12. Z. Taylor, M. Cheng, and S. Ourselin. High-speed nonlinear finite element analysis for surgical simulation using graphics processing units. IEEE Transactions on Medical Imaging, 27(5):650-663, 2008 .
    @ARTICLE{ZeikeTMI2007,
    
     author = {Z. Taylor and M. Cheng and S. Ourselin},
    
     title = {High-speed nonlinear finite element analysis for surgical simulation using graphics processing units},
    
     journal = {IEEE Transactions on Medical Imaging},
    
     volume={27},
    
     number={5},
    
     pages={650-663},
    
     year={2008}
     
    }
    

  13. L. Wang, K.L. Chan, P. Xue, and L. Zhou. A Kernel-Induced Space Selection Approach to Model Selection in KLDA. IEEE Transactions on Neural Networks, 19(12):2116--2131, 2008.
    @article{wang_TNN_2008,
    author = {Wang, L. and Chan, K.L. and Xue, P. and Zhou, L.},
    title = {A Kernel-Induced Space Selection Approach to Model Selection in KLDA},
    journal = {IEEE Transactions on Neural Networks},
    volume = {19},
    number = {12},
    year = {2008},
    pages = {2116--2131} 
    }
    

  14. K.G. Yan, Y. Yu, D. Xiao, T. Podder, I. Bruzovic and Y.D. Hu, and W.S. Ng. Flexible Needle-Tissue Interaction Modeling using Depth-varying Mean Parameter. The HKIE Transactions, 15(4), December 2008.
    @ARTICLE{DiXiao015,
    
     author = {K.G. Yan and Y. Yu and D. Xiao and T. Podder and I. Bruzovic and
     Y.D. Hu and W.S. Ng},
    
     title = {Flexible Needle-Tissue Interaction Modeling using Depth-varying Mean
     Parameter},
    
     journal = {The HKIE Transactions},
    
     year = {2008},
    
     volume = {15},
    
     number = {4},
    
     month = {December},
    
     
    }
    

Conference articles

  1. Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Erik Bonner, Sebastien Ourselin, and Olivier Salvado. Automatic delineation of sulci and improved partial volume classification for accurate 3D cortical thickness estimation from MR. In 11th International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI 2008), LNCS, New York, USA, pages 253-261, September 2008 . SPRINGER.
    @InProceedings{Acosta:MICCAI:08,
    
     Author = {Acosta, Oscar and Bourgeat, Pierrick and Fripp, Jurgen and Bonner, Erik and Ourselin, Sebastien and Salvado, Olivier},
    
     Title = {Automatic delineation of sulci and improved partial volume classification for accurate {3D} cortical thickness estimation from MR},
    
     BookTitle = {11th International Conference on Medical Image Computing and Computer-Assisted Interventions ({MICCAI 2008})},
    
     Volume = {},
    
     Number = {},
    
     pages = {253-261},
    
     Address = {New York, USA},
    
     month = {September},
    
     pdf = {http://www.springerlink.com/content/x383j5l03wv7r3m0/},
    
     series = {{LNCS}},
    
     publisher = {{SPRINGER}},
    
     optannote = {},
    
     optcrossref = {},
    
     opteditor = {},
    
     optkey = {},
    
     optnumber = {},
    
     optorganization = {},
    
     optseries = {},
    
     optvolume = {},
    
     year = 2008
     
    }
    

  2. Oscar Acosta, Hans Frimmel, Aaron Fenster, Olivier Salvado, and Sebastien Ourselin. Pyramidal Flux in an Anisotropic Diffusion Scheme for Enhancing Structures in 3D Images. In Proceedings of SPIE: Image Processing, volume 6914, San Diego, USA, pages 12p, February 2008 .
    @InProceedings{Acosta:SPIE:08,
    
     Author = {Acosta, Oscar and Frimmel, Hans and Fenster, Aaron and Salvado, Olivier and Ourselin, Sebastien},
    
     Title = {Pyramidal Flux in an Anisotropic Diffusion Scheme for Enhancing Structures in 3D Images},
    
     BookTitle = {Proceedings of {SPIE}: Image Processing},
    
     Volume = {6914},
    
     Number = {691429},
    
     Pages = {12p},
    
     Address = {San Diego, USA},
    
     month = {February},
    
     pdf = {http://spiedl.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PSISDG006914000001691429000001&idtype=cvips&gifs=yes},
    
     optannote = {},
    
     optcrossref = {},
    
     opteditor = {},
    
     optkey = {},
    
     optnote = {Accepted for publication},
    
     optnumber = {},
    
     optorganization = {},
    
     optseries = {},
    
     optvolume = {},
    
     year = 2008
     
    }
    

  3. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. New cortical thickness estimation method for atrophy characterization of Alzheimer's disease patients. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. .
    @InProceedings{Bourgeat:icad:08,
    
     Author = {Bourgeat, P. and Acosta, O. and Fripp, J. and Masters, C. and Rowe, C. 
     and Villemagne, V. and Ourselin, S. and Salvado, O.},
    
     Title = {New cortical thickness estimation method for atrophy characterization of Alzheimer's disease patients},
    
     booktitle = {11th International Conference on Alzheimer's Disease},
    
     year = {2008},
    
     address = {Chicago, Il},
    
     month = {July 26-31},
    
     publisher = {}
     
    }
    

  4. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, O. Salvado, and S. Ourselin. Cortical thickness estimation of Alzheimer's disease patients: Application to the Australian Imaging Biomarkers and Lifestyle (AIBL) study. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping .
    @InProceedings{Bourgeat:ohbm:08,
    
     Author = {Bourgeat, P. and Acosta, O. and Fripp, J. and Masters, C. and Rowe, C. 
     and Villemagne, V. and Salvado, O. and Ourselin, S.},
    
     Title = {Cortical thickness estimation of Alzheimer's disease patients: Application to the Australian Imaging Biomarkers and Lifestyle (AIBL) study},
    
     booktitle = {14th Annual Meeting of the Organization for Human Brain Mapping},
    
     year = {2008},
    
     address = {Melbourne, Australia},
    
     month = {June 15-19},
    
     publisher = {Organization for Human Brain Mapping}
     
    }
    

  5. P. Bourgeat, O. Acosta, M. Zuluaga, J. Fripp, O. Salvado, and S. Ourselin. Improved cortical thickness measurement from MR images using partial volume estimation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 205-208 , April 2008. IEEE.
    @InProceedings{Bourgeat:isbi:08,
    
     Author = {Bourgeat, P. and Acosta, O. and Zuluaga, M. and Fripp, J. and Salvado, O. and Ourselin, S.},
    
     Title = {Improved cortical thickness measurement from MR images using partial volume estimation},
    
     booktitle = {IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
    
     publisher = {IEEE},
    
     address = {Paris, France},
    
     month = {April},
    
     year = 2008,
    
     pages = {205-208} 
     
    }
    

  6. S. S. Chandra and I. Svalbe. A method for removing cyclic artefacts in discrete tomography using Latin squares. In Proceedings of the 19th International Conference on Pattern Recognition, pages 1-4, Dec. 2008.
    Abstract: This paper presents a technique to remove image artefacts, formed under the cyclic additive group Zp, during the inverse Radon reconstruction from prime-dimensioned discrete projections. The cyclic artefacts are circulant matrices that arise from gaps in the known projection data. These artefacts are superimposed periodically on the reconstructed image. The summed value of unknown artefacts at an arbitrary image pixel location is determined using other, overlapping artefact combinations that are located at image positions where their component values are known. Latin squares are used to optimise the selection of these known elements. The result requires an irregular sampling to obtain the known correction values, but, once found, provides a multitude of exact solutions, as the sampling pattern for artefact corrections is translation invariant.

    @CONFERENCE{Chandra2008b,
    author = {Chandra, S. S. and Svalbe, I.},
    title = {A method for removing cyclic artefacts in discrete tomography using {L}atin squares},
    booktitle = {Proceedings of the 19th International Conference on Pattern Recognition},
    year = {2008},
    pages = {1-4},
    month = {Dec.},
    abstract = {This paper presents a technique to remove image artefacts, formed under the cyclic additive group Zp, during the inverse Radon reconstruction from prime-dimensioned discrete projections. The cyclic artefacts are circulant matrices that arise from gaps in the known projection data. These artefacts are superimposed periodically on the reconstructed image. The summed value of unknown artefacts at an arbitrary image pixel location is determined using other, overlapping artefact combinations that are located at image positions where their component values are known. Latin squares are used to optimise the selection of these known elements. The result requires an irregular sampling to obtain the known correction values, but, once found, provides a multitude of exact solutions, as the sampling pattern for artefact corrections is translation invariant.},
    issn = {1051-4651} 
    }
    

  7. Amine Chellali, Isabelle Milleville-Pennel, and Cédric Dumas. Elaboration of a common frame of reference in collaborative virtual environments. In Proceedings of the 15th European conference on Cognitive ergonomics: the ergonomics of cool interaction, ECCE '08, Funchal, Portugal, pages 21:1–21:8 , 2008. ACM.
    Note: ACM ID: 1473045.
    Abstract: Motivation -- To design virtual environments that support collaborative activities. Research approach -- An experimental approach in which 44 students were asked to work in pairs to reconstruct five {3D} figures. {Findings/Design} -- The results show that including a contextual clue in virtual environments improves collaboration between operators. Research limitations -- Further investigative work must be carried out to extract accurate female collaboration profiles. {Originality/Value} -- The results enable three collaboration profiles to be identified. They also allow the extraction of some characteristics of a contextual clue which can be added to a virtual environment to improve collaboration. Take away message -- The contents of a collaborative virtual environment influences the way that users collaborate.

    @InProceedings{dumas:ecce:2008,
    
     address = {Funchal, Portugal},
    
     series = {{ECCE} '08},
    
     title = {Elaboration of a common frame of reference in collaborative virtual environments},
    
     isbn = {978-1-60558-399-0},
    
     url = {http://dx.doi.org/10.1145/1473018.1473045},
    
     abstract = {Motivation -- To design virtual environments that support collaborative activities. Research approach -- An experimental approach in which 44 students were asked to work in pairs to reconstruct five {3D} figures. {Findings/Design} -- The results show that including a contextual clue in virtual environments improves collaboration between operators. Research limitations -- Further investigative work must be carried out to extract accurate female collaboration profiles. {Originality/Value} -- The results enable three collaboration profiles to be identified. They also allow the extraction of some characteristics of a contextual clue which can be added to a virtual environment to improve collaboration. Take away message -- The contents of a collaborative virtual environment influences the way that users collaborate.},
    
     booktitle = {Proceedings of the 15th European conference on Cognitive ergonomics: the ergonomics of cool interaction},
    
     publisher = {{ACM}},
    
     author = {Chellali, Amine and {Milleville-Pennel}, Isabelle and Dumas, Cédric},
    
     year = {2008},
    
     note = {{ACM} {ID:} 1473045},
    
     keywords = {3d interface, artificial, augmented, and virtual realities, collaboration},
    
     pages = {21:1–21:8}
     
    }
    

  8. Amine Chellali, Isabelle Milleville-Pennel, and Cedric Dumas. Influence des systèmes de référence sur les profils de collaboration dans un environnement virtuel. In Proceedings of the 20th International Conference of the Association Francophone d'Interaction Homme-Machine, IHM '08, Metz, France, pages 63–70 , 2008. ACM.
    Note: ACM ID: 1512727.
    Abstract: Virtual collaborative environment are {3D} shared spaces in which people can work together. To collaborate through these systems users must have a shared comprehension of the environment. In this study we manipulated contents of a virtual environment to understand how people construct compatible comprehensions of this shared environment. Results show that the use of stable visual landmarks leads to different collaboration profiles.

    @InProceedings{chellali_influence_2008,
    
     address = {Metz, France},
    
     series = {{IHM} '08},
    
     title = {Influence des systèmes de référence sur les profils de collaboration dans un environnement virtuel},
    
     isbn = {978-1-60558-285-6},
    
     url = {http://dx.doi.org/10.1145/1512714.1512727},
    
     abstract = {Virtual collaborative environment are {3D} shared spaces in which people can work together. To collaborate through these systems users must have a shared comprehension of the environment. In this study we manipulated contents of a virtual environment to understand how people construct compatible comprehensions of this shared environment. Results show that the use of stable visual landmarks leads to different collaboration profiles.},
    
     booktitle = {Proceedings of the 20th International Conference of the Association Francophone {d'Interaction} {Homme-Machine}},
    
     publisher = {{ACM}},
    
     author = {Chellali, Amine and {Milleville-Pennel}, Isabelle and Dumas, Cedric},
    
     year = {2008},
    
     note = {{ACM} {ID:} 1512727},
    
     keywords = {3d, collaboration, common frame of reference},
    
     pages = {63–70}
     
    }
    

  9. O. Comas, Z. Taylor, J. Allard, S. Ourselin, S. Cotin, and J. Passenger. Efficient nonlinear FEM for soft tissue modelling and its GPU implementation within the open source framework SOFA. In Proceedings of ISBMS 2008, London, United Kingdom , pages 28-39, July 7-8 2008.
    @InProceedings{Comas2008ISBMS,
    
     author = {Comas, O. and Taylor, Z. and Allard, J. and Ourselin, S. and Cotin, S. and Passenger, J.},
    
     title = {Efficient nonlinear {FEM} for soft tissue modelling and its {GPU} implementation within the open source framework {SOFA}},
    
     booktitle = {Proceedings of ISBMS 2008},
    
     pages = {28-39},
    
     year = {2008},
    
     month = {July 7-8},
    
     address = {London, United Kingdom}
     
    }
    

  10. D. Conlan, J. Passenger, O. Comas, and O. Salvado. Implementing a GPU based Spatial Hash Generator. In ICT Centre Conference 2008, Sydney, Australia , 2008.
    @InProceedings{Conlan2008ICT,
    
     author = {D. Conlan and J. Passenger and O. Comas and O. Salvado},
    
     title = {Implementing a {GPU} based Spatial Hash Generator},
    
     booktitle = {ICT Centre Conference 2008},
    
     year = {2008},
    
     address = {Sydney, Australia}
     
    }
    

  11. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. Greer, J. Patterson, J. Denham, P. Stanwell, S. Ourselin, and O. Salvado. Fast automatic correction of non-rigid motion artefacts in MRI of the abdomen. In Proceedings of MICCAI Prostate Workshop (New York, September 2008), 2008.
    @INPROCEEDINGS{Dowling2008,
    
     author = {Dowling, J. and Bourgeat, P. and Raffelt, D. and Fripp, J. and Greer,
     P. and Patterson, J. and Denham, J. and Stanwell, P. and Ourselin,
     S. and Salvado, O.},
    
     title = {Fast automatic correction of non-rigid motion artefacts in {MRI}
     of the abdomen},
    
     booktitle = {{P}roceedings of MICCAI Prostate Workshop (New York, September 2008)},
    
     year = {2008},
    
     
    }
    

  12. J. Dowling, B. Planitz, A. Maeder, J. Du, B. Pham, C. Boyd, S. Chen, A. Bradley, and S. Crozier. A comparison of DCT and DWT block based watermarking on medical image quality. In Y.Q. Shi, H.-J. Kim, and S. Katzenbeisser, editors, Proceedings of the 6th International Workshop on Digital Image Watermarking ( IWDW), Guangzhou, China, December 2007, volume LNCS 5041, pages 454-466, 2008. Springer-Verlag .
    @INPROCEEDINGS{Dowling2008a,
    
     author = {Dowling, J. and Planitz, B. and Maeder, A. and Du, J. and Pham, B.
     and Boyd, C. and Chen, S. and Bradley, A. and Crozier, S.},
    
     title = {A comparison of DCT and DWT block based watermarking on medical image
     quality},
    
     booktitle = {Proceedings of the 6th International Workshop on Digital Image Watermarking
     ( IWDW), Guangzhou, China, December 2007},
    
     year = {2008},
    
     editor = {Shi, Y.Q. and Kim, H.-J. and Katzenbeisser, S.},
    
     volume = {LNCS 5041},
    
     pages = {454-466},
    
     publisher = {Springer-Verlag}
     
    }
    

  13. K.A. Ellis, V.L. Villemagne, D. Ames, N. Lenzo, K.E. Pike , G. O'Keefe, H. Tochon-Danguy, R. Price, G. Jones, M. Rimajova , P. Bourgeat, P. Raniga, J. Fripp, O. Acosta, O. Salvado , R. Martins, C.L. Masters, and C.C. Rowe. The Australian biomarker, imaging and lifestyle study: Preliminary PiB results. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. .
    @InProceedings{Ellis:icad:08,
    
     Author = {K.A. Ellis and V.L. Villemagne and D. Ames and N. Lenzo and K.E. Pike 
     and G. O'Keefe and H. Tochon-Danguy and R. Price and G. Jones and M. Rimajova 
     and P. Bourgeat and P. Raniga and J. Fripp and O. Acosta and O. Salvado 
     and R. Martins and C.L. Masters and C.C. Rowe},
    
     Title = {The Australian biomarker, imaging and lifestyle study: Preliminary PiB results},
    
     booktitle = {11th International Conference on Alzheimer's Disease},
    
     year = {2008},
    
     address = {Chicago, Il},
    
     month = {July 26-31},
    
     publisher = {}
     
    }
    

  14. S.G.H. Erbou, S. Darkner, J. Fripp, S. Ourselin, and B.K. Ersboll. ESTIMATION OF SHAPE MODEL PARAMETERS FOR 3D SURFACES. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 624-627, May 2008 . IEEE.
    @InProceedings{Erbou2008:ISBI,
    
     Title = {ESTIMATION OF SHAPE MODEL PARAMETERS FOR 3D SURFACES},
    
     Author = {S.G.H. Erbou and S. Darkner and J. Fripp and S. Ourselin and B.K. Ersboll},
    
     BookTitle = {International Symposium on Biomedical Imaging: From Nano to Macro},
    
     Volume = {},
    
     Pages = {624-627},
    
     Address = {Paris, France},
    
     Publisher = {IEEE},
    
     month = "May",
    
     opteditor = {},
    
     year = 2008
     
    }
    

  15. J. Fripp, P. Bourgeat, O. Acosta, G. Jones, V. Villemagne, S. Ourselin, C. Rowe, and O. Salvado. Generative atlases and atlas selection for C11-PIB PET-PET registration of Elderly, Mild cognitive impaired and Alzheimer disease patients. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 1155-1158, May 2008 . IEEE.
    @InProceedings{Fripp2008:ISBI,
    
     Title = {Generative atlases and atlas selection for C11-PIB PET-PET registration of Elderly, Mild cognitive impaired and Alzheimer disease patients},
    
     Author = {J. Fripp and P. Bourgeat and O. Acosta and G. Jones and V. Villemagne and S. Ourselin and C. Rowe and O. Salvado},
    
     BookTitle = {International Symposium on Biomedical Imaging: From Nano to Macro},
    
     Volume = {},
    
     Pages = {1155-1158},
    
     Address = {Paris, France},
    
     Publisher = {IEEE},
    
     Month = "May",
    
     opteditor = {},
    
     Year = 2008
     
    }
    

  16. J. Fripp, P. Bourgeat, P. Raniga, O. Acosta, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. Modeling the appearance variation of 11C-PiB PET images.. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008.
    @InProceedings{Fripp:icad:08,
    
     Author = {Fripp, J. and Bourgeat, P. and Raniga, P. and Acosta, O. and Masters, C. and Rowe, C. and Villemagne, V. and Ourselin, S. and Salvado, O.},
    
     Title = {Modeling the appearance variation of 11C-PiB PET images.},
    
     booktitle = {11th International Conference on Alzheimer's Disease},
    
     year = {2008},
    
     address = {Chicago, Il},
    
     month = {July 26-31},
    
     publisher = {},
    
     
    }
    

  17. J. Fripp, P. Bourgeat, P. Raniga, O Acosta, V. Villegmane, G. O'keefe, G. Jones, C. Rowe, S. Ourselin, and O. Salvado. MR-less high dimensional spatial normalization of 11C PiB PET images on a population of Elderly, Mild cognitive impaired and Alzheimer disease patients. In 11th International Conference on Medical Image Computing and Computer Assisted Intervention, pages 442-449 , 2008.
    @InProceedings{fripp:MICCAI:2008,
    
     Title = {MR-less high dimensional spatial normalization of 11C PiB PET images on a population of Elderly, Mild cognitive impaired and Alzheimer disease patients},
    
     Author = {Fripp, J. and Bourgeat, P. and Raniga, P. and Acosta, O, and Villegmane, V. and O'keefe, G. and Jones, G. and Rowe, C. and Ourselin, S. and Salvado, O.},
    
     BookTitle = {11th International Conference on Medical Image Computing and Computer Assisted Intervention},
    
     Year = {2008},
    
     pages ={442-449}
     
    }
    

  18. J. Fripp, V. Jurcak, R. Holt, S. Ourselin, C. Engstom, and S. Crozier. Reproducibility of Automatic Quantitative Analysis of the Articular Cartilages from MEDIC and weDESS Magnetic Resonance Images of the Knee at 1.5T. In , Toronto, May 2008 .
    Note: Accepted for publication.
    @InProceedings{Fripp2008:ISMRM,
    
     Title = {Reproducibility of Automatic Quantitative Analysis of the Articular Cartilages from MEDIC and weDESS Magnetic Resonance Images of the Knee at 1.5T},
    
     Author = {J. Fripp and V. Jurcak and R. Holt and S. Ourselin and C. Engstom and S. Crozier},
    
     BookTitle = {},
    
     Volume = {},
    
     Pages = {},
    
     Address = {Toronto},
    
     Publisher = {},
    
     Month = "May",
    
     opteditor = {},
    
     Note = {accepted for publication},
    
     Year = 2008
     
    }
    

  19. D Hellier, E Samur, J Passenger, U Spälter, H Frimmel, M Appleyard, H Bleuler, and S Ourselin. A modular simulation framework for colonoscopy using a new haptic device.. In James D. Westwood, Randy S. Haluck, Helene M. Hoffman, Greg T. Mogel, Roger Phillips, Richard A. Robb, and Kirby G. Vosburgh, editors, Medicine Meets Virtual Reality 16 - parallel, combinatorial, convergent: NextMed by Design, volume 132 of Studies in Health Technology and Informatics, pages 165--70, 2008. IOS Press .
    @INPROCEEDINGS{Hellier2008a,
    
     author = {Hellier, D and Samur, E and Passenger, J and Sp\"{a}lter, U and Frimmel,
     H and Appleyard, M and Bleuler, H and Ourselin, S},
    
     title = {A modular simulation framework for colonoscopy using a new haptic
     device.},
    
     series = {Studies in Health Technology and Informatics},
    
     booktitle = {Medicine Meets Virtual Reality 16 - parallel, combinatorial, convergent:
     NextMed by Design},
    
     editor = {James D. Westwood and Randy S. Haluck and Helene M. Hoffman and Greg
     T. Mogel and Roger Phillips and Richard A. Robb and Kirby G. Vosburgh},
    
     year = {2008},
    
     volume = {132},
    
     pages = {165--70},
    
     publisher = {IOS Press}
     
    }
    

  20. P. J. Hudson, R. Robert, A. Rembach, K.L. Wark, S. Ourselin , O. Salvado, K.A. Ellis, D. Ames, C.L. Masters, A. Bush, R.N. Martins, and C.C. Rowe. Early stage Alzheimer's disease diagnosis in a unique progressing cohort by correlation of Cognition, Neuroimaging and blood biomarkers (the AIBL Cluster Study). In Keystone, editor, Keystone Symposia on Alzheimer's disease, 04 2008. Keystone Symposia.
    @CONFERENCE{Hudson2008,
    
     author = {P. J. Hudson and R. Robert and A. Rembach and K.L. Wark and S. Ourselin
     and O. Salvado and K.A. Ellis and D. Ames and C.L. Masters and A.
     Bush and R.N. Martins and C.C. Rowe},
    
     title = {Early stage Alzheimer's disease diagnosis in a unique progressing
     cohort by correlation of Cognition, Neuroimaging and blood biomarkers
     (the AIBL Cluster Study)},
    
     booktitle = {Keystone Symposia on Alzheimer's disease},
    
     year = {2008},
    
     editor = {Keystone},
    
     month = {04},
    
     organization = {Keystone Symposia},
    
     
    }
    

  21. V. Jurcak, J. Fripp, C. Engstrom, D. Walker, O. Salvado, S. Ourselin, and S. Crozier. ATLAS BASED AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE USING NON-RIGID REGISTRATION ON MAGNETIC RESONANCE IMAGES OF THE THORACOLUMBAR REGION. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 113-116, May 2008 . IEEE.
    @InProceedings{Jurcak2008:ISBI,
    
     Title = {ATLAS BASED AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE USING NON-RIGID REGISTRATION ON MAGNETIC RESONANCE IMAGES OF THE THORACOLUMBAR REGION},
    
     Author = {V. Jurcak and J. Fripp and C. Engstrom and D. Walker and O. Salvado and S. Ourselin and S. Crozier},
    
     BookTitle = {International Symposium on Biomedical Imaging: From Nano to Macro},
    
     Volume = {},
    
     Pages = {113-116},
    
     Address = {Paris, France},
    
     Publisher = {IEEE},
    
     month = "May",
    
     opteditor = {},
    
     year = 2008
     
    }
    

  22. V. Jurcak, J. Fripp, E. Engstrom, D. Walker, O Salvado, S. Ourselin, and S Crozier. Automated segmentation of the quadratus lumborum muscle from Magnetic Resonance Images using a hybrid atlas based - Geodesic active contour scheme. In EMBC, 2008.
    @InProceedings{fripp:EMBC:2008,
    
     Title = {Automated segmentation of the quadratus lumborum muscle from Magnetic Resonance Images using a hybrid atlas based - Geodesic active contour scheme},
    
     Author = {Jurcak, V. and Fripp, J. and Engstrom, E. and Walker, D. and Salvado, O, and Ourselin, S. and Crozier, S},
    
     BookTitle = {EMBC},
    
     Year = {2008},
    
     
    }
    

  23. J. Lambert, P. Greer, J. Patterson, J. Dowling, O. Salvado , and F. Menk. Bulk electron density treatment planning for MRI-based prostate radiotherapy. In In Proceedings of the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) 2008 pubolished in the Journal of Australasian College of Physical Scientists and Engineers in Medicine, 31(4), p. 353, 2008.
    @INPROCEEDINGS{Lambert2008,
    
     author = {J. Lambert and P. Greer and J. Patterson and J. Dowling and O. Salvado
     and F. Menk},
    
     title = {Bulk electron density treatment planning for {MRI}-based prostate
     radiotherapy},
    
     booktitle = {In Proceedings of the Engineering and Physical Sciences in Medicine and The Australian Biomedical Engineering College Conference ( EPSM-ABEC) 2008 pubolished in the Journal of Australasian College of Physical Scientists and Engineers in Medicine, 31(4), p. 353},
    
     year = {2008},
    
     
    }
    

  24. A. Maeder, J. Dowling, A. Nguyen, E. Brunton, and P Nguyen. Assuring Authenticity of Digital Mammograms by Image Watermarking. In 9th International Workshop on Digital Mammography (IWDM 2008), Springer LNCS 5116, pages 204-211, 2008.
    @INPROCEEDINGS{Maeder2008,
    
     author = {Maeder, A. and Dowling, J. and Nguyen, A. and Brunton, E. and Nguyen,
     P},
    
     title = {Assuring Authenticity of Digital Mammograms by Image Watermarking},
    
     booktitle = {9th International Workshop on Digital Mammography (IWDM 2008), Springer
     LNCS 5116},
    
     year = {2008},
    
     pages = {204-211},
    
     
    }
    

  25. Pascal Maillard, Lionel Flaction, Evren Samur, David Hellier, Josh Passenger, and Hannes Bleuler. Instrumentation of a Clinical Colonoscope for Surgical Simulation. In 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pages 70-73 , 2008.
    @INPROCEEDINGS{Maillard2008,
    
     author = {Pascal Maillard and Lionel Flaction and Evren Samur and David Hellier and Josh Passenger and Hannes Bleuler},
    
     title = {Instrumentation of a Clinical Colonoscope for Surgical Simulation},
    
     booktitle = {30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society},
    
     year = {2008},
    
     pages = {70-73}
     
    }
    

  26. J. Passenger, O. Acosta, H. de Visser, S. Bauer, C. Russ, and S. Ourselin. Texture Coordinate Generation of Colonic Surface Meshes for Surgical Simulation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 640-643 , April 2008. IEEE.
    @InProceedings{Passenger:isbi:08,
    
     Author = {Passenger, J. and Acosta, O. and de Visser, H. and Bauer, S. and Russ, C. and Ourselin, S.},
    
     Title = {Texture Coordinate Generation of Colonic Surface Meshes for Surgical Simulation},
    
     booktitle = {IEEE International Symposium on Biomedical Imaging: From Nano to Macro},
    
     publisher = {IEEE},
    
     address = {Paris, France},
    
     month = {April},
    
     year = 2008,
    
     pdf = {},
    
     pages = {640-643}
     
    }
    

  27. J. Passenger, H. de Visser, O. Comas, D. Conlan, C. Russ, S. Riek, M. Watson, and O. Salvado. GPU Programming - New Frontiers for Surgical Simulator. In SimTecT Healthcare Simulation 2008, Brisbane, Australia, pages 35 , September 2008.
    @InProceedings{Passenger:SimTect2008a,
    
     Author = {Passenger, J. and de Visser, H. and Comas, O. and Conlan, D. and Russ, C. and Riek, S. and Watson, M. and Salvado, O.},
    
     Title = {GPU Programming - New Frontiers for Surgical Simulator},
    
     booktitle = {SimTecT Healthcare Simulation 2008},
    
     address = {Brisbane, Australia},
    
     month = {September},
    
     year = 2008,
    
     pdf = {},
    
     pages = {35}
     
    }
    

  28. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, S. Ourselin, C. Masters, D. Ames, P. Hudson, C. Rowe, V. Villemagne, and O. Salvado. Optimization Of Partial Volume Correction Strategies for [11]C-PiB Quantification. In Alzheimer's Association International Conference in Alzheimer's Disease 2008, Chicago, IL, July 26-31 2008. Alzheimer's Association.
    @INPROCEEDINGS{Raniga:icad:2008,
    
     AUTHOR = {Raniga, P. and Fripp, J. and Bourgeat, P. and Acosta, O. and Ourselin, S. and Masters, C. and Ames, D. and Hudson, P. and Rowe, C. and Villemagne, V. and Salvado, O.},
    
     TITLE = {Optimization Of Partial Volume Correction Strategies for [11]C-PiB Quantification},
    
     BOOKTITLE = {Alzheimer's Association International Conference in Alzheimer's Disease 2008},
    
     YEAR = {2008},
    
     ADDRESS = {Chicago, IL},
    
     MONTH = {July 26-31},
    
     PUBLISHER = {Alzheimer's Association},
    
     
    }
    

  29. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, V. Villemagne, C. Rowe, C. Masters, O. Salvado, and S. Ourselin. Automated Standardized Uptake Value Ratio of 11C-PIB PET analysis in Alzheimers disease. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping.
    Note: CD-ROM paper number 345 W-AM .
    @INPROCEEDINGS{Raniga:ohbm:2008,
    
     AUTHOR = {Raniga, P. and Fripp, J. and Bourgeat, P. and Acosta, O. and Villemagne, V. and Rowe, C. and Masters, C. and Salvado, O. and Ourselin, S.},
    
     TITLE = {Automated Standardized Uptake Value Ratio of 11C-PIB PET analysis in Alzheimers disease},
    
     BOOKTITLE = {14th Annual Meeting of the Organization for Human Brain Mapping},
    
     YEAR = {2008},
    
     ADDRESS = {Melbourne, Australia},
    
     MONTH = {June 15-19},
    
     PUBLISHER = {Organization for Human Brain Mapping},
    
     NOTE = {CD-ROM paper number 345 W-AM} 
     
    }
    

  30. C. Russ, J. Passenger, S. Riek, D. Hewett, M. Watson, and O. Salvado. Real-time Photorealistic Rendering Techniques for Surgical Simulation. In SimTecT Healthcare Simulation 2008, Brisbane, Australia, pages 47--48 , September 2008.
    @InProceedings{Passenger:SimTect2008b,
    
     Author = {Russ, C. and Passenger, J. and Riek, S. and Hewett, D. and Watson, M. and Salvado, O.},
    
     Title = {Real-time Photorealistic Rendering Techniques for Surgical Simulation},
    
     booktitle = {SimTecT Healthcare Simulation 2008},
    
     address = {Brisbane, Australia},
    
     month = {September},
    
     year = 2008,
    
     pdf = {},
    
     pages = {47--48}
     
    }
    

  31. Evren Samur, Lionel Flaction, Ulrich Spaelter, Hannes Bleuler , David Hellier, and Sebastien Ourselin. A Haptic Interface with Motor-Brake System for Colonoscopy Simulation. In Haptic Interfaces for Virtual Environment and Teleoperator Systems, 2007. HAPTICS 2007. Symposium on, pages 477-478 , 2008.
    @INPROCEEDINGS{Samur2008,
    
     author = {Evren Samur and Lionel Flaction and Ulrich Spaelter and Hannes Bleuler
     and David Hellier and Sebastien Ourselin},
    
     title = {A Haptic Interface with Motor-Brake System for Colonoscopy Simulation},
    
     booktitle = {Haptic Interfaces for Virtual Environment and Teleoperator Systems,
     2007. HAPTICS 2007. Symposium on},
    
     year = {2008},
    
     pages = {477-478}
     
    }
    

  32. Grant Steyer, David L. Wilson, Debashish Roy, Olivier Salvado , and Meredith E. Heinzel Stone. Cryo-imaging of fluorescently labeled single cells in a mouse. In SPIE, editor, SPIE'08, volume 7262 of Biomedical Applications in Molecular, Structural, and Functional Imaging, Lake Buena Vista, FL United States, February 2008. SPIE.
    Abstract: We developed and evaluated cryo-imaging to provide single-cell detection of fluorescently labeled cells in mouse. Our cryo-imaging system provides extreme (>60GB), micron-scale, fluorescence, and bright field image data. Here we describe our image pre-processing, analysis, and visualization techniques. Processing improves axial resolution, reduces subsurface fluorescence by 97%, and enables single cell detection and counting. High quality 3D volume renderings enable us to evaluate cell distribution patterns. Applications include the myriad of biomedical experiments using fluorescent reporter gene and exogenous fluorophore labeling of cells in applications such as stem cell regenerative medicine, cancer, tissue engineering, etc.

    @INPROCEEDINGS{steyer_2008,
    
     author = {Grant Steyer and David L. Wilson and Debashish Roy and Olivier Salvado
     and Meredith E. Heinzel Stone},
    
     title = {Cryo-imaging of fluorescently labeled single cells in a mouse},
    
     booktitle = {SPIE'08},
    
     year = {2008},
    
     editor = {SPIE},
    
     volume = {7262},
    
     series = {Biomedical Applications in Molecular, Structural, and Functional
     Imaging},
    
     address = {Lake Buena Vista, FL United States},
    
     month = "February",
    
     publisher = {SPIE},
    
     abstract = {We developed and evaluated cryo-imaging to provide single-cell detection
     of fluorescently labeled cells in mouse. Our cryo-imaging system
     provides extreme (>60GB), micron-scale, fluorescence, and bright
     field image data. Here we describe our image pre-processing, analysis,
     and visualization techniques. Processing improves axial resolution,
     reduces subsurface fluorescence by 97%, and enables single cell detection
     and counting. High quality 3D volume renderings enable us to evaluate
     cell distribution patterns. Applications include the myriad of biomedical
     experiments using fluorescent reporter gene and exogenous fluorophore
     labeling of cells in applications such as stem cell regenerative
     medicine, cancer, tissue engineering, etc.},
    
     journal = {Medical Imaging 2008},
    
     
    }
    

  33. Z.A. Taylor, O. Comas, M. Cheng, J. Passenger, D.J. Hawkes, D. Atkinson, and S. Ourselin. Modelling anisotropic viscoelasticity for real-time soft tissue simulation. In Proceedings of MICCAI 2008, New York, USA , pages 703-710, September 6-10 2008.
    @InProceedings{Taylor2008MICCAI,
    
     author = {Taylor, Z.A. and Comas, O. and Cheng, M. and Passenger, J. and Hawkes, D.J. and Atkinson, D. and Ourselin, S.},
    
     title = {Modelling anisotropic viscoelasticity for real-time soft tissue simulation},
    
     booktitle = {Proceedings of MICCAI 2008},
    
     pages = {703-710},
    
     year = {2008},
    
     month = {September 6-10},
    
     address = {New York, USA}
     
    }
    

  34. L. Wang, L. Zhou, and C. Shen. A Fast Algorithm for Creating a Compact and Discriminative Visual Codebook. In Proceedings of European Conference on Computer Vision (ECCV), pages 719--732, 2008.
    @inproceedings{wang_ECCV_2008,
    author = {Wang, L. and Zhou, L. and Shen, C.},
    title = {A Fast Algorithm for Creating a Compact and Discriminative Visual Codebook},
    booktitle = {Proceedings of European Conference on Computer Vision (ECCV)},
    address = {},
    month = {},
    year = {2008},
    pages = {719--732} 
    }
    

  35. L. Zhou, R. Hartley, L. Wang, P. Lieby, and N. Barnes. Regularized Discriminative Direction for Shape Difference Analysis. In Proceedings of International Conference on Medical Image Computing And Computer Assisted Intervention (MICCAI), pages 628--635, 2008.
    @inproceedings{zhou_MICCAI_2008,
    author = {Zhou, L. and Hartley, R. and Wang, L. and Lieby, P. and Barnes, N.},
    title = {Regularized Discriminative Direction for Shape Difference Analysis},
    booktitle = {Proceedings of International Conference on Medical Image Computing And Computer Assisted Intervention (MICCAI)},
    address = {},
    month = {},
    year = {2008},
    pages = {628--635} 
    }
    

  36. Maria Zuluaga, Oscar Acosta, Pierrick Bourgeat, Olivier Salvado, Marcela Hernandez, and Sebastien Ourselin. Cortical Thickness Measurement from Magnetic Resonance Images Using Partial Volume Estimation. In Proceedings of SPIE: Image Processing, volume 6914, San Diego, USA, pages 8p, February 2008 .
    @InProceedings{ZuluagaAcosta:SPIE:08,
    
     Author = {Zuluaga, Maria and Acosta, Oscar and Bourgeat, Pierrick and Salvado, Olivier and Hernandez, Marcela and Ourselin, Sebastien},
    
     Title = {Cortical Thickness Measurement from Magnetic Resonance Images Using Partial Volume Estimation},
    
     BookTitle = {Proceedings of {SPIE}: Image Processing},
    
     Volume = {6914},
    
     Number = {69140J},
    
     Pages = {8p},
    
     Address = {San Diego, USA},
    
     month = {February},
    
     pdf = {http://spiedl.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=PSISDG00691400000169140J000001&idtype=cvips&gifs=Yes},
    
     optannote = {},
    
     optcrossref = {},
    
     opteditor = {},
    
     optkey = {},
    
     optnote = {Accepted for publication},
    
     optnumber = {},
    
     optorganization = {},
    
     optseries = {},
    
     optvolume = {},
    
     year = 2008
     
    }
    

  37. H. de Visser, O. Comas, D. Conlan, S. Ourselin, J. Passenger, and O. Salvado. Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model. In Proceedings of ISBMS 2008, London, UK, July 2008.
    @InProceedings{deVisser:isbms:08,
    author = {de Visser, H. and Comas, O. and Conlan, D. and Ourselin, S. and Passenger, J. and Salvado, O.},
    title = {Deforming a High-Resolution Mesh in Real-Time by Mapping onto a Low-Resolution Physical Model},
    booktitle = {Proceedings of ISBMS 2008},
    address = {London, UK},
    year = {2008},
    month = {July} 
    }
    


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