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Publications of Jurgen Fripp

Articles in journal, book chapters

  1. O. Acosta, J. Fripp, V. Dore, P. Bourgeat, J-M. Favreau, G. Chételat, A. Rueda, V.L. Villemagne, C. Szoeke, D. Ames, K.A. Ellis, R.N. Martins, C.L. Masters, C.C. Rowe, E. Bonner, F. Gris, D. Xiao, P. Raniga, V. Barra, and O. Salvado. Cortical surface mapping using topology correction, partial flattening and 3D shape context-based non-rigid registration for use in quantifying atrophy in Alzheimer's disease. Journal of Neuroscience Methods, 205(1):96-109, March 2012. [bibtex-entry]

  2. Shekhar Chandra, Jason Dowling, Kaikai Shen, Parnesh Raniga, Josien F Pluim, Peter B Greer, Olivier Salvado, and Jurgen Fripp. Patient specific prostate segmentation in 3-D magnetic resonance images. IEEE Transactions on Medical Imaging, 31(10):1955-64, 2012. [bibtex-entry]

  3. J. Dowling, J. Lambert, J. Parker, O. Salvado, J. Fripp, C. Wratten, A. Capp, J.W. Denham, and P. Greer. An atlas-based electron-density mapping method for MRI-alone treatment planning and adaptive MRI-based prostate radiation therapy. International Journal of Radiation Oncology, Biology, Physics, 83(1):e5-e11, 2012. [bibtex-entry]

  4. Ales Neubert, Jurgen Fripp, Craig Engstrom, Raphael Schwarz, Lars Lauer, Olivier Salvado, and Stuart Crozier. Automated Detection, 3D Segmentation and Analysis of High Resolution Spine MR Images Using Statistical Shape Models. Physics in Medicine and Biology, 9:8357-8376, 2012. [bibtex-entry]

  5. A. Neubert, O. Salvado, O. Acosta, P. Bourgeat, and J. Fripp. Constrained reverse diffusion for thick slice interpolation of 3D volumetric MRI images. Computerized Medical Imaging and Graphics, 36(2):130-138, 2012. [bibtex-entry]

  6. Anthony Paproki, Xavier Sirault, Scott Berry, Robert Furbank, and Jurgen Fripp. A novel mesh processing based technique for 3D plant analysis. BMC Plant Biology, 12(1):63, 2012. [bibtex-entry]

  7. Kaikai Shen, Jurgen Fripp, Fabrice Mériaudeau, Gaël Chételat, Olivier Salvado, and Pierrick Bourgeat. Detecting global and local hippocampal shape changes in Alzheimer's disease using statistical shape models. NeuroImage, 59(3):2155-2166, 2012. [bibtex-entry]

  8. K.A. Ellis, C.C. Rowe, C. Szoeke, V.L. Villemagne, D. Ames, G. Chételat, R.N. Martins, C.L. Masters, J. Fripp, O. Acosta, P. Raniga, P. Bourgeat, and O. Salvado. Advances in structural and molecular neuroimaging in Alzheimer's disease. The Medical Journal of Australia, 194(4):S20-S23, February 2011. [bibtex-entry]

  9. P.B. Greer, J. Dowling, J.A. Lambert, J. Fripp, J. Parker, J.W. Denham, C. Wratten, A. Capp, and O. Salvado. A magnetic resonance imaging-based workflow for planning radiation therapy for prostate cancer. The Medical Journal of Australia, 194(4):S24-S27, 2011. [bibtex-entry]

  10. David Raffelt, J-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Symmetric diffeomorphic registration of fibre orientation distributions. NeuroImage, 56(3):1171-1180, June 2011. Note: PMID: 21316463. [bibtex-entry]

  11. P. Bourgeat, G. Chételat, V. Villemagne, J. Fripp, P. Raniga, K. Pike, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, R. Martins, C. Masters, C. Rowe, O. Salvado, and the AIBL Research Group. AB burden in the temporal neocortex is related to hippocampal atrophy in elderly subjects without dementia. Neurology, 74(2):121-127, January 2010. [bibtex-entry]

  12. C. Engstrom, J. Fripp, V. Jurcack, O. Salvado, and S. Crozier. Segmentation of the quadratus lumborum muscle using statistical shape modeling. Journal of MRI, 2010. Note: Accepted. [bibtex-entry]

  13. J. Fripp, S. Crozier, S.K. Warfield, and S. Ourselin. Automatic Segmentation and Quantitative Analysis of the Articular Cartilages from Magnetic Resonance Images of the Knee. IEEE Transactions on Medical Imaging, 29(1):55-64, January 2010. [bibtex-entry]

  14. C. Rowe, K. Ellis, M. Rimajova, P. Bourgeat, K.E. Pike, G. Jones, J. Fripp, H. Tochon-Danguy, L. Morandeau, G. O'Keefe, R. Price, P. Raniga, P. Robins, O. Acosta, N. Lenzo, C. Szoeke, O. Salvado, R. Head, R. Martins, C.L. Masters, D. Ames, and V.L. Villemagne. Amyloid imaging results from the Australian imaging, biomarkers and lifestyle study of ageing (AIBL). Neurobiology of Aging, 31(8):1275-1283, August 2010. [bibtex-entry]

  15. Andrea Rueda, Oscar Acosta, Michel Couprie, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Eduardo Romero, and Olivier Salvado. Topology-corrected segmentation and local intensity estimates for improved partial volume classification of brain cortex in MRI. Journal of Neuroscience Methods, 188(2):305-315, May 2010. [bibtex-entry]

  16. Oscar Acosta, Pierrick Bourgeat, Maria A. Zuluaga, Jurgen Fripp, Olivier Salvado, and Sebastien Ourselin. Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. Medical Image Analysis, 13(5):730-743, October 2009. [bibtex-entry]

  17. J. Fripp, P. Bourgeat, O. Acosta, P. Raniga, M. Modat, K.E. Pike, G. Jones, G. O'Keefe, C.L. Masters, D. Ames, K.A. Ellis, P. Maruff, J. Currie, V.L. Villemagne, C.C. Rowe, O. Salvado, and S. Ourselin. Appearance Modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairement and healthy aging. NeuroImage, 43(3):430-439, Novembre 2008. [bibtex-entry]

  18. P. Raniga, P. Bourgeat, J. Fripp, O. Acosta, V. Villemagne, C. Rowe, C. Masters, G. Jones, G. O'Keefe, O. Salvado, and S. Ourselin. Automated [11]C-PiB Standardized Uptake Value Ratio. Academic Radiology, 15(11):1376-1389, November 2008. [bibtex-entry]

  19. P. Bourgeat, J. Fripp, P. Stanwell, S Ramadan, and S. Ourselin. MR image segmentation of the knee bone using phase information. Medical Image Analysis, 11(4):325-335, July 2007. [bibtex-entry]

  20. J. Fripp, P. Bourgeat, S. Crozier, and S. Ourselin. Shape based segmentation of MRIs of the knee using phase and magnitude information. Academic Radiology, 14(10):1201-1208, October 2007. [bibtex-entry]

  21. J. Fripp, S. Crozier, S. Warfield, and S. Ourselin. Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Physics in Medicine and Biology, 52(6):1617-1631, March 2007. [bibtex-entry]

  22. Pierrick Bourgeat, Vincent Dore, Victor Villemagne, Chris Rowe, Olivier Salvado, and Jurgen Fripp. MilXplore: A web-based system to explore large imaging datasets. Journal of the American Medical Informatics Association, . [bibtex-entry]

  23. Vincent Dore, Victor Villemagne, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Lance Macaulay, Kathryn Ellis, Colin Masters, David Ames, Olivier Salvado, and Chris Rowe. Cross-sectional and longitudinal analysis of the relationship between A\beta deposition, cortical thickness and memory at the presymptomatic stage of Alzheimer’s disease.. Archives of Neurology, . [bibtex-entry]

  24. Jean-Baptiste Fiot, Laurent Cohen, Parnesh Raniga, and Jurgen Fripp. Efficicient brain lesion segmentation using Support Vector Machines and tissue-based feature selection. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, . [bibtex-entry]

  25. Jurgen Fripp and Shakes Chandra. Automated knee cartilage morphological analysis of 3D MRI at 3T. FLASH, . [bibtex-entry]

  26. Ales Neubert, Jurgen Fripp, Craig Engstrom, Duncan Walker, Marc-Andr‚ Weber, Raphael Schwarz, and Stuart Crozier. 3D morphological and signal intensity features for detection of intervertebral disc degeneration from MR images. Journal of American Medical Informatics Association, . [bibtex-entry]

Conference articles

  1. Xavier Sirault, Jurgen Fripp, Anthony Paproki, Jianming Guo, Peter Kuffner, Helen Daily, Xavier Li, Rongxina nd Sirault, and Robert Furbank. PlantScan: a three-dimensional phenotyping platform for capturing the structural dynamic of plant development and growth. In 7th International Conference on Functional-Structural Plant Models, pages 75, November 2013. [bibtex-entry]

  2. P. Bourgeat, V. Dore, K. Shen, P. Raniga, O. Salvado, J. Fripp, and the Alzheimer’s Disease Neuroimaging Initiative. Atrophy challenge: Enforcing Longitudinal Consistency in Longitudinal analysis using multi-atlas segmentation. In MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders (NIBAD'12), Nice, France, October 5 2012. [bibtex-entry]

  3. P. Bourgeat, J. Fripp, P. Raniga, V. Dore, L. Zhou, R. Martins, S.L. Macaulay, C. Masters, D. Ames, K.A. Ellis, V. Villemagne, C. Rowe, O. Salvado, and Aibl research group. Longitudinal modeling of joint PiB/MRI changes in Alzheimer’s disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2012, Vancouver, Canada, July 14-19 2012. Alzheimer's Association. [bibtex-entry]

  4. Pierrick Bourgeat, Parnesh Raniga, Vincent Dore, Luping Zhou, Lance Macaulay, Ralph Martins, Colin Masters, David Ames, Kathryn Ellis, Victor Villemagne, Chris Rowe, Olivier Salvado, and Jurgen Fripp. Manifold driven MR-less PiB SUVR normalisation. In MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders, Nice, France, pages 01-Dec-13, 2012. MICCAI. [bibtex-entry]

  5. P. Bourgeat, O. Salvado, P. Raniga, V. Dore, L. Zhou, R. Martins, S.L. Macaulay, C. Masters, D. Ames, K. A. Ellis, V. Villemagne, C. Rowe, J. Fripp, and Aibl research group. Classification of Alzheimer’s subject based on PiB-MR Manifold learning. In Alzheimer's Association International Conference in Alzheimer's Disease 2012, Vancouver, Canada, July 14-19 2012. Alzheimer's Association. [bibtex-entry]

  6. Shekhar Chandra, Ying Xia, Craig Engstrom, Raphael Schwarz, Lars Lauer, Stuart Crozier, Olivier Salvado, and Jurgen Fripp. Unilateral Hip Joint Segmentation with Shape Priors Learned from Missing Data. In IEEE International Symposium on Biomedical Imaging (ISBI), Proc. of, Barcelona, Spain, May 2012. [bibtex-entry]

  7. Vincent Dore, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Gael Chetelat, Cassandra Szoeke, Kathryn Ellis, Ralph Martins, Victor Villemagne, Colin Masters, David Ames, Christopher Rowe, and Olivier Salvado. A Surface Based approach for cortical thickness comparison between PiB+ and PiB- Healthy Control subjects. In Proc. SPIE 8314, Medical Imaging 2012, San Diego, California United States, pages 831413-6, 2012. SPIE. [bibtex-entry]

  8. Vincent Dore, Jurgen Fripp, Pierrick Bourgeat, Oscar Acosta, Luping Zhou, Parnesh Raniga, Ralph Martins, Lance Macaulay, Kathryn Ellis, Colin Masters, David Ames, Victor Villemagne, Christopher Rowe, and Olivier Salvado. Longitudinal analysis of cortical thickness in PiB+ and PiB- healthy elderly controls. In , volume 8, pages P34, July 2012. [bibtex-entry]

  9. J. Dowling, J. Lambert, S. Chandra, J. Parker, J. Sun, P. Stanwell, J. Fripp, O. Salvado, and P. Greer. MRI based radiation therapy treatment planning. In Proceedings of The Australian-Canadian Prostate Cancer Research Alliance Symposium, DayDream Island, Queensland, Australia, pages 16-17, 2012. [bibtex-entry]

  10. Jason Dowling, Jonathon Lambert, Shakes Chandra, Joel Parker, Jidi Sun, Peter Stanwell, Jurgen Fripp, Olivier Salvado, and Peter Greer. MRI-based radiation therapy treatment planning. In Australian-Canadian Prostate Cancer Research Alliance Symposium, Daydream Island, QLD, Australia, pages pp. 16-17, 2012. Conference book only (I assume). [bibtex-entry]

  11. Jean-Baptiste Fiot, Laurent Risser, Laurent Cohen, Jurgen Fripp, and Francois-Xavier Vialard. Local vs global descriptors of hippocampus shape evolution for Alzheimer’s longitudinal population analysis. In MICCAI workshop, Nice, France, pages 13-24, 2012. Springer Berlin Heidelberg. [bibtex-entry]

  12. Jurgen Fripp, Rachel Surowiec, Erin Lucas, Craig Engstrom, Shakes Chandra, Raphael Schwarz, Charles Ho, and Stuart Crozier. Automated cartilage morphometric and T2 mapping using 3D-FSE MRI at 3T. In International Society for Magnetic Resonance in Medicine, Utah, pages , 2012. Wiley. [bibtex-entry]

  13. Kaikai Shen, Pierrick Bourgeat, Jurgen Fripp, Fabrice Meriaudeau, and Olivier Salvado. Consistent estimation of shape parameters in statistical shape model by symmetric EM algorithm. In Medical Imaging 2012: Image Processing, volume 8314, San Diego, California, USA, pages 83140R, 2012. SPIE. [bibtex-entry]

  14. Xavier Sirault, Anthony Paproki, Jurgen Fripp, Jianming Guo, Helen Daily, Ron Li, Chuong Nguyen, and Robert Furbank. 3D plant analysis over time: understanding plant architecture, growth and function using imaging technologies. In PhenoDays 2012, pages 555 -560, October 2012. [bibtex-entry]

  15. L. Zhou, V. Dore, J. Fripp, P. Bourgeat, P. Raniga, R. Martins, S.L. Macaulay, C. Masters, D. Ames, K. A. Ellis, V. Villemagne, C. Rowe, O. Salvado, and Aibl research group. MRI-independent Automated Surface-projection of Amyloid imaging scans. In Alzheimer's Association International Conference in Alzheimer's Disease 2012, Vancouver, Canada, July 14-19 2012. Alzheimer's Association. [bibtex-entry]

  16. L. Zhou, O. Salvado, V. Dore, P. Bourgeat, P. Raniga, V. Villemagne, C. Rowe, and J. Fripp. Surface-based Amyloid Estimation without MRI by Subject-specific Atlas Selection and Bayesian Fusion. In 15th International Conference on Medical Image Computing And Computer-Assisted Intervention (MICCAI'12), LNCS, Nice, France, October 1-5 2012. Springer Verlag. [bibtex-entry]

  17. Shekhar Chandra, Jason Dowling, Kaikai Shen, Josien Pluim, Peter Greer, Olivier Salvado, and Jurgen Fripp. Automatic Segmentation of the Prostate in 3D Magnetic Resonance Images using Case Specific Deformable Models. In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, pages 7 - 12, 2011. [bibtex-entry]

  18. V. Doré, P. Bourgeat, J. Fripp, O. Acosta, G. Chetelat, C. Szoeke, K.A. Eliis, R.N. Martin, N. Lenzo, V. Villemagne, C.L. Master, D. Ames, C.C. Rowe, O. Salvado, and the Aibl Research Group. Cortical Thickness comparison between PiB-positive and PiB-negative Healthy Control patients. In In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association, Vol. 7, Issue 4, pp S210-S211, 2011. [bibtex-entry]

  19. V. Doré, J. Fripp, P. Bourgeat, O. Acosta, and O. Salvado. MRI Intensity Tissues Normalisation for Longitudinal Surface Based Analysis of the WM/GM Contrast, application to Alzheimer's Disease. In In Proceedings of the 19th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Montreal, Canada, May 7-13 2011, 2011. [bibtex-entry]

  20. V. Doré, J. Fripp, P. Bourgeat, K. Shen, and O. Salvado. Surface-base Approach using a Multi-Scale EM-ICP Registration for Statistical Population Analysis. In In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, to appear, 2011. [bibtex-entry]

  21. J. Dowling, J. Fripp, S. Chandra, J. Pluim, J. Lambert, J. Parker, J. Denham, P.B. Greer, and O. Salvado. Fast automatic multi-atlas segmentation of the prostate from 3D MR images. In MICCAI 2011 Workshop on Prostate Cancer Imaging: Image Analysis and Image-Guided Interventions, volume 6963, pages 10-21, 2011. Springer LNCS. [bibtex-entry]

  22. A. Neubert, J. Fripp, K. Shen, C. Engstrom, R. Schwarz, L. Lauer, O. Salvado, and S. Crozier. Automated segmentation of lumbar vertebral bodies and intervertebral discs from MRI using statistical shape models. In Proceedings of International Society for Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Montréal, Canada, May 2011. [bibtex-entry]

  23. A. Neubert, J. Fripp, K. Shen, O. Salvado, R. Schwarz, L. Lauer, C. Engstrom, and S. Crozier. Automated 3D Segmentation of Vertebral Bodies and Intervertebral Discs from MRI. In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, volume To be presented, 2011. [bibtex-entry]

  24. Chuong Nguyen, Paul Jackway, Ron Li, Changming Sun, David Lovell, Xavier Sirault, Scott Berry, Robert Furbank, Anthony Paproki, Jurgen Fripp, and John LaSalle. Image analysis for Accelerated Phenomics. In CSIRO Workshop on Workflows, High-Throughput Imaging, Visualisation and Accelerated Computing, pages 1, October 2011. [bibtex-entry]

  25. Anthony Paproki, Jurgen Fripp, Olivier Salvado, Xavier Sirault, Scott Berry, and Robert Furbank. Automated 3D Segmentation and Analysis of Cotton Plants. In International Conference on Digital Image Computing: Techniques and Applications (DICTA), pages 555 -560, December 2011. [bibtex-entry]

  26. Anthony Paproki, Jurgen Fripp, Xavier Sirault, Scott Berry, and Robert Furbank. Automated Plant Phenomics 3D Analysis. In International Plant Phenomics Network, 2nd International Plant Phenotyping Symposium, Book of Abstracts, pages 75, November 2011. [bibtex-entry]

  27. P. Raniga, P. Schmitt, P. Bourgeat, J. Fripp, V. Villemagne, C. Rowe, and O. Salvado. Local Intensity Model: An Outlier Detection Framework With Applications To White Matter Hyperintensity Segmentation. In Biomedical Imaging: From Nano to Macro, 2011. ISBI 2011. 8th IEEE International Symposium on, Chicago, IL, March 2011. IEEE. [bibtex-entry]

  28. Kaikai Shen, Pierrick Bourgeat, Jurgen Fripp, Fabrice Meriaudeau, and Olivier Salvado. Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models. In Medical Imaging 2011: Image Processing, volume 7962, Lake Buena Vista, Florida, USA, pages 796243-7, 2011. SPIE. [bibtex-entry]

  29. Kaikai Shen, Jurgen Fripp, Fabrice Meriaudeau, Gaël Chetelat, Olivier Salvado, and Pierrick Bourgeat. Localization of hippocampal atrophy in Alzheimer's disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, pages S17-S18, July 2011. [bibtex-entry]

  30. Ying Xia, Shekhar Chandra, Olivier Salvado, Jurgen Fripp, Raphael Schwarz, Lars Lauer, Craig Engstrom, and Stuart Crozier. Automated Bone Segmentation and Bone-Cartilage Interface Extraction from MR Images of the Hip. In Submitted in the International Society for Magnetic Resonance in Medicine (ISMRM) Conference, 2011. [bibtex-entry]

  31. Ying Xia, Shekhar Chandra, Olivier Salvado, Jurgen Fripp, Raphael Schwarz, Lars Lauer, Craig Engstrom, and Stuart Crozier. Automated MR Hip Bone Segmentation. In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, 2011. [bibtex-entry]

  32. Oscar Acosta, Jurgen Fripp, Andrea Rueda, Di Xiao, Erik Bonner, Pierrick Bourgeat, and Olivier Salvado. 3D shape context surface registration for cortical mapping. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, pages 1021-1024, 14-17 April 2010. IEEE. [bibtex-entry]

  33. Neil Burdett, Jurgen Fripp, Pierrick Bourgeat, and Olivier Salvado. MILXView: A Medical Imaging, Analysis and Visualization Platform. In IFIP Advances in Information and Communication Technology, volume 335, pages 177, 2010. Springer. [bibtex-entry]

  34. J. Dowling, J. Lambert, J. Parker, J. Fripp, J. Denham, C. Wratten, P. Bourgeat, C Tang, O. Salvado, and P.B. Greer. Feasibility of Atlas Based Organ Segmentation and Electron Density Mapping for MRI Based Prostate Radiation Therapy Planning. In Fifty sixth annual meeting of the Canadian Organization of Medical Physicists and the Canadian College of Physicists in Medicine, volume 37, pages 3907, 2010. Medical Physics. [bibtex-entry]

  35. J. Dowling, J. Lambert, J. Parker, P.B. Greer, J. Fripp, J. Denham, S. Ourselin, and O. Salvado. Automatic MRI atlas-based external beam radiation therapy treatment planning for prostate cancer. In MICCAI 2010 Workshop on Prostate Cancer Imaging: Computer-Aided Diagnosis, Prognosis, and Intervention, volume 6367, pages 25-33, 2010. Springer LNCS. [bibtex-entry]

  36. J. Dowling, J. Lambert, J. Parker, P.B. Greer, J. Fripp, and O. Salvado. Can we use MRI alone for external beam radiation therapy treatment planning of prostate cancer?. In Proceedings of the 2010 PCFA National Conference, pages 51, 2010. [bibtex-entry]

  37. Kelvin Leung, Kaikai Shen, Josephine Barnes, Gerard Ridgway, Matthew Clarkson, Jurgen Fripp, Olivier Salvado, Fabrice Meriaudeau, Nick Fox, Pierrick Bourgeat, and Sébastien Ourselin. Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. In Tianzi Jiang, Nassir Navab, Josien Pluim, and Max Viergever, editors, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010, volume 6362 of Lecture Notes in Computer Science, pages 125-132, 2010. Springer. [bibtex-entry]

  38. David Raffelt, J-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Symmetric Diffeomorphic Normalisation of Fibre Orientation Distributions. In Proceedings of International Society for Magnetic Resonance in Medicine, Stockholm, Sweden, May 2010. [bibtex-entry]

  39. David Raffelt, J.-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Symmetric Diffeomorphic Normalisation of Fibre Orientation Distributions. In Proceedings of International Society for Magnetic Resonance in Medicine, Stockholm, Sweden, May 2010. [bibtex-entry]

  40. P. Raniga, J. Fripp, O. Acosta, P. Bourgeat, C Szoeke, G O'Keefe, K. Ellis, R. Martins, G Chetelat, V. Villemagne, C. Masters, D. Ames, C. Rowe, and O. Salvado. Effects of partial volume correction on the analysis of 11C-PiB PET in assessing Alzheimer's disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2010, Honolulu, USA, July 10-15 2010. Alzheimer's Association. [bibtex-entry]

  41. P. Raniga, K. Pannek, J. Fripp, D. Raffelt, P. Bourgeat, O. Acosta, D. Tournier, A. Connelly, S.E. Rose, and O. Salvado. A Monte-Carlo approach for estimating white matter density in HARDI diffusion data. In Proceedings of the 18th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Stockholm, Sweden, May 1-7 2010. [bibtex-entry]

  42. Kaikai Shen, Pierrick Bourgeat, Jurgen Fripp, Fabrice Meriaudeau, David Ames, Kathryn A. Ellis, Colin L. Masters, Victor L. Villemagne, Christopher C. Rowe, and Olivier Salvado. Supervised method to build an atlas database for multi-atlas segmentation-propagation. In Nico Karssemeijer and Ronald M. Summers, editors, Medical Imaging 2010: Computer-Aided Diagnosis, volume 7624, San Diego, California, USA, pages 76241N-8, March 2010. SPIE. [bibtex-entry]

  43. Erik Bonner, Oscar Acosta, Jurgen Fripp, and Olivier Salvado. A Quantitative Comparison of Three Methods For Inflating Cortical Meshes. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 1338-1341, June 2009. IEEE. [bibtex-entry]

  44. P. Bourgeat, V. Villemagne, J. Fripp, K. Pike, P. Raniga, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, C. Rowe, and O. Salvado. Relation between amyloid burden, brain atrophy and cognition in Alzheimer's disease. In 12th International Conference on Alzheimer's Disease, Vienna, Austria, July 11-16 2009. [bibtex-entry]

  45. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. B. Greer, J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, and O. Salvado. Nonrigid correction of interleaving artefacts in pelvic MRI. In Josien P. W. Pluim and Benoit M. Dawant, editors, Proceedings of SPIE Medical Imaging 2009: Image Processing, Florida, volume 7259, pages 72592P, 2009. SPIE. [bibtex-entry]

  46. J. Dowling, J. Fripp, P. Greer, J. Patterson, S. Ourselin, and O. Salvado. Automatic atlas-based segmentation of the prostate: A MICCAI 2009 Prostate Segmentation Challenge entry. In Proceedings of 2009 MICCAI Prostate Segmentation Challenge (London, September 2009), 2009. [bibtex-entry]

  47. J. Dowling, A. Neubert, J. Fripp, P. Bourgeat, J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, P. B. Greer, and O. Salvado. Atlas-based, automatic segmentation of the pelvis for prostate radiotherapy planning. In In Proceedings of the Royal Australian and New Zealand College of Radiologists (RANZCR, Australian Institute of Radiography (AIR) and the Australasian College of Physical Scientists & Engineers in Medicine (ACPSEM) Combined Scientific Meeting published in the Journal Of Medical Imaging and Radiation Oncology, Vol 53(supplement 1), p. 65, 2009. [bibtex-entry]

  48. J. Fripp, P. Bourgeat, C. Engstrom, S. Ourselin, S. Crozier, and O. Salvado. Automated Segmentation of the Menisci From MR Images. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 510-513, June 2009. [bibtex-entry]

  49. J. Fripp, V. Villemagne, P. Bourgeat, P. Raniga, O. Acosta, C. Szoeke, D. Ames, K.A. Ellis, C.L. Masters, C. Rowe, and O. Salvado. Characterizing 11C PiB PET Images.. In 12th International Conference on Alzheimer's Disease, 2009. Note: Accepted. [bibtex-entry]

  50. David Raffelt, Jacques-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Spatial Normalization of High Angular Resolution Diffusion Imaging Data using Fiber Orientation Distributions. In Diffusion Workshop, London, United Kingdom, September 2009. [bibtex-entry]

  51. David Raffelt, Jacques-Donald Tournier, Jurgen Fripp, Stuart Crozier, Alan Connelly, and Olivier Salvado. Spatial Normalization of High Angular Resolution Diffusion Imaging Data using Fiber Orientation Distributions. In Diffusion Workshop, London, United Kingdom, September 2009. [bibtex-entry]

  52. D. Raffelt, D. Tournier, J. Fripp, N. Lepore, S. Crozier, A. Connelly, and O. Salvado. Non-Rigid Registration of Diffusion Weighted Images using Fibre Orientation Distributions. In Proceedings of ISMRM, Honolulu, Hawaii, April 2009. [bibtex-entry]

  53. D. Raffelt, D. Tournier, J. Fripp, N. Lepore, S. Crozier, A. Connelly, and O. Salvado. Non-Rigid Registration of Diffusion Weighted Images using Fibre Orientation Distributions. In Proceedings of ISMRM, Honolulu, Hawaii, April 18-24 2009. [bibtex-entry]

  54. Parnesh Raniga, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Sebastien Ourselin, Christopher Rowe, Victor L Villemagne, and Olivier Salvado. Alzheimers disease detection using 11C-PiB with improved partial volume effect correction. In SPIE: Medical Imaging, Lake Buena Vista, FL, USA, 2009. SPIE. [bibtex-entry]

  55. P. Raniga, V. Villemagne, J. Fripp, P. Bourgeat, O. Acosta, C Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, O. Salvado, and C. Rowe. Correlation between white matter hyperintensities in MRI-FLAIR and 11C-PiB PET retention. A new potential for early identification of disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2009, Vienna, Austria, July 11-16 2009. Alzheimer's Association. [bibtex-entry]

  56. Andrea Rueda, Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Michel Couprie, Eduardo Romero, and Olivier Salvado. Partial Volume Estimation orf Brain Cortex From MRI Using Topology-Corrected Segmentation. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 133-136, June 2009. IEEE. [bibtex-entry]

  57. D. Xiao, P. Bourgeat, J. Fripp, O. Acosta, M.C. Gregoire, and O. Salvado. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. In Proc. of SPIE, Medical Imaging 2009: Image Processing, volume 7259, pages 72591G, 2009. [bibtex-entry]

  58. D. Xiao, D. Zahra, P. Bourgeat, J. Fripp, P. Berghofer, O. Acosta, M.C. Gregoire, and O. Salvado. Hybrid non-rigid registration method for registering rat skeletons from micro-CT images. In SNM 2009 Annual Meeting, Toronto, Canada, June 2009. [bibtex-entry]

  59. Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Erik Bonner, Sebastien Ourselin, and Olivier Salvado. Automatic delineation of sulci and improved partial volume classification for accurate 3D cortical thickness estimation from MR. In 11th International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI 2008), LNCS, New York, USA, pages 253-261, September 2008. SPRINGER. [bibtex-entry]

  60. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. New cortical thickness estimation method for atrophy characterization of Alzheimer's disease patients. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. [bibtex-entry]

  61. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, O. Salvado, and S. Ourselin. Cortical thickness estimation of Alzheimer's disease patients: Application to the Australian Imaging Biomarkers and Lifestyle (AIBL) study. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping. [bibtex-entry]

  62. P. Bourgeat, O. Acosta, M. Zuluaga, J. Fripp, O. Salvado, and S. Ourselin. Improved cortical thickness measurement from MR images using partial volume estimation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 205-208, April 2008. IEEE. [bibtex-entry]

  63. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. Greer, J. Patterson, J. Denham, P. Stanwell, S. Ourselin, and O. Salvado. Fast automatic correction of non-rigid motion artefacts in MRI of the abdomen. In Proceedings of MICCAI Prostate Workshop (New York, September 2008), 2008. [bibtex-entry]

  64. K.A. Ellis, V.L. Villemagne, D. Ames, N. Lenzo, K.E. Pike, G. O'Keefe, H. Tochon-Danguy, R. Price, G. Jones, M. Rimajova, P. Bourgeat, P. Raniga, J. Fripp, O. Acosta, O. Salvado, R. Martins, C.L. Masters, and C.C. Rowe. The Australian biomarker, imaging and lifestyle study: Preliminary PiB results. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. [bibtex-entry]

  65. S.G.H. Erbou, S. Darkner, J. Fripp, S. Ourselin, and B.K. Ersboll. ESTIMATION OF SHAPE MODEL PARAMETERS FOR 3D SURFACES. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 624-627, May 2008. IEEE. [bibtex-entry]

  66. J. Fripp, P. Bourgeat, O. Acosta, G. Jones, V. Villemagne, S. Ourselin, C. Rowe, and O. Salvado. Generative atlases and atlas selection for C11-PIB PET-PET registration of Elderly, Mild cognitive impaired and Alzheimer disease patients. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 1155-1158, May 2008. IEEE. [bibtex-entry]

  67. J. Fripp, P. Bourgeat, P. Raniga, O. Acosta, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. Modeling the appearance variation of 11C-PiB PET images.. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. [bibtex-entry]

  68. J. Fripp, P. Bourgeat, P. Raniga, O. Acosta, V. Villegmane, G. O'keefe, G. Jones, C. Rowe, S. Ourselin, and O. Salvado. MR-less high dimensional spatial normalization of 11C PiB PET images on a population of Elderly, Mild cognitive impaired and Alzheimer disease patients. In 11th International Conference on Medical Image Computing and Computer Assisted Intervention, pages 442-449, 2008. [bibtex-entry]

  69. J. Fripp, V. Jurcak, R. Holt, S. Ourselin, C. Engstom, and S. Crozier. Reproducibility of Automatic Quantitative Analysis of the Articular Cartilages from MEDIC and weDESS Magnetic Resonance Images of the Knee at 1.5T. In , Toronto, May 2008. Note: Accepted for publication. [bibtex-entry]

  70. V. Jurcak, J. Fripp, C. Engstrom, D. Walker, O. Salvado, S. Ourselin, and S. Crozier. ATLAS BASED AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE USING NON-RIGID REGISTRATION ON MAGNETIC RESONANCE IMAGES OF THE THORACOLUMBAR REGION. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 113-116, May 2008. IEEE. [bibtex-entry]

  71. V. Jurcak, J. Fripp, E. Engstrom, D. Walker, O. Salvado, S. Ourselin, and S Crozier. Automated segmentation of the quadratus lumborum muscle from Magnetic Resonance Images using a hybrid atlas based - Geodesic active contour scheme. In EMBC, 2008. [bibtex-entry]

  72. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, S. Ourselin, C. Masters, D. Ames, P. Hudson, C. Rowe, V. Villemagne, and O. Salvado. Optimization Of Partial Volume Correction Strategies for [11]C-PiB Quantification. In Alzheimer's Association International Conference in Alzheimer's Disease 2008, Chicago, IL, July 26-31 2008. Alzheimer's Association. [bibtex-entry]

  73. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, V. Villemagne, C. Rowe, C. Masters, O. Salvado, and S. Ourselin. Automated Standardized Uptake Value Ratio of 11C-PIB PET analysis in Alzheimers disease. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping. Note: CD-ROM paper number 345 W-AM. [bibtex-entry]

  74. J. Fripp, P. Bourgeat, S. Crozier, and S. Ourselin. Shape-based segmentation of MRIs of the bones in the knee. In SPIE: Medical Imaging, volume 6512, San Diego, CA, USA, pages 651212, February 2007. SPIE. [bibtex-entry]

  75. J Fripp, S Crozier, S.K Warfield, and S. Ourselin. Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. In 10th International Conference on Medical Image Computing and Computer Assisted Intervention, Brisbane, Australia, pages 186-194, October 2007. [bibtex-entry]

  76. J. Fripp, S. Crozier, S.K. Warfield, and S. Ourselin. Automatic segmentation of the knee bones using 3D active shape models. In International Symposium on Biomedical Imaging: From Nano to Macro, Washington, pages 336-339, April 2007. IEEE. [bibtex-entry]

  77. P. Bourgeat, J. Fripp, P. Stanwell, S. Ramadan, and S. Ourselin. MR image segmentation using phase information and a novel multiscale scheme. In 9th International Conference on Medical Image Computing And Computer-Assisted Intervention (MICCAI'06), volume 4191 of LNCS, Copenhagen, Denmark, pages 920-927, October 1-6 2006. Springer. [bibtex-entry]

  78. J. Fripp, S. Crozier, S.K. Warfield, and S. Ourselin. A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages. In SPIE: Medical Imaging, volume 6141, San Diego, CA, USA, pages 622-631, March 2006. SPIE. [bibtex-entry]

  79. J. Fripp, S. Crozier, S.K. Warfield, and S. Ourselin. Automatic segmentation of the knee bones using 3D active shape models. In International Conference of Pattern Recognition, volume 1, Hong Kong, pages 167-170, August 2006. [bibtex-entry]

  80. P. Bourgeat, J. Fripp, A. Janke, G. Galloway, S. Crozier, and S. Ourselin. The use of unwrapped phase in MR image segmentation: A preliminary study. In 8th International Conference on Medical Image Computing And Computer-Assisted Intervention (MICCAI'05), volume 3750 of LNCS, Palm Springs, California, pages 813-820, October 26-29 2005. Springer Verlag. [bibtex-entry]

  81. J. Fripp, P. Bourgeat, A.U.J. Mewes, S.K. Warfield, S. Crozier, and S. Ourselin. 3D statistical shape models to embed spatial relationship information. In Computer Vision for Biomedical Image Applications: Current techniques and future trends, an ICCV workshop, volume 3765 of LNCS, Beijing, China, pages 51-60, October 2005. Springer Verlag. [bibtex-entry]

  82. J. Fripp, S. Crozier, S.K. Warfield, and S. Ourselin. Automatic Initialization of 3D Deformable Models for Cartilage Segmentation.. In DICTA, pages 74, 2005. [bibtex-entry]

  83. J. Fripp, S. Ourselin, S. Warfield, A. Mewes, and S. Crozier. Automatic Generation of 3D Statistical Shape Models of the Knee Bones. In APRS Workshop on Digital Image Computing, pages 15-21, February 2005. [bibtex-entry]

  84. Pierrick Bourgeat, Vincent Dore, Victor Villemagne, Chris Rowe, Olivier Salvado, and Jurgen Fripp. MilXplore: A web-based system to explore large imaging datasets. In eResearch Australasia, Brisbane, . eResearch. [bibtex-entry]

  85. Pierrick Bourgeat, Victor Villemagne, Vincent Dore, Jurgen Fripp, Ralph Martins, Lance Macaulay, Colin Masters, David Ames, Kathryn A Ellis, Christopher Rowe, and Olivier Salvado. Automatic 11C PiB SUVR quantification. In ICAD, Boston, USA, . Alzheimer's Association. [bibtex-entry]

  86. Vincent Dore, Pierrick Bourgeat, Luping Zhou, Jurgen Fripp, Ralph Martins, Lance Macaulay, Colin Masters, David Ames, Kathryn A Ellis, Christopher Rowe, Olivier Salvado, and Victor Villemagne. MR-less cortical surface-projection of PET scans with 11C and 18F Labeled radiotracers. In Alzheimer's Association International Conference AAIC, Boston, . The Alzheimer's Association. [bibtex-entry]

  87. Jason Dowling, Peter Greer, Neil Burdett, Jidi Sun, Joel Parker, Peter Pichler, Peter Stanwell, Shakes Chandra, David Rivest-Henault, Soumya Ghose, Jurgen Fripp, and Olivier Salvado. Cloud based electron density estimation and automatic contouring for MRI-alone radiation therapy planning. In International Conference on the Use of Computers in Radiation Therapy, Melbourne, . IOS. [bibtex-entry]

  88. Jhimli Mitra, Jurgen Fripp, Pierrick Bourgeat, Stephen Rose, Olivier Salvado, Soumya Ghose, Leeanne Carey, Bruce Campbell, Alan Connelly, and Susan Palmer. Classification forests and MRF to segment chronic ischemic infarcts from multimodal MRI. In MICCAI Multimodal Brain Image Analysis (MBIA), Nagoya, Japan, . Springer-Lecture Notes in Computer Science. [bibtex-entry]

  89. Ales Neubert, Jurgen Fripp, Craig Engstrom, Duncan Walker, Raphael Schwarz, and Stuart Crozier. Automatic quantification of 3D morphology and appearance of intervertebral discs in high resolution MRI. In International Society for Magnetic Resonance in Medicine (ISMRM) Annual Meeting and Exhibition, Salt Lake City, USA, . International Society for Magnetic Resonance in Medicine (ISMRM). [bibtex-entry]

  90. David Rivest-Henault, Peter Greer, Jurgen Fripp, and Jason Dowling. Structure-guided Nonrigid registration of CT?MR Pelvis Scans with large deformations in MR-based Image Guided Radiation Therapy. In MICCAI - Abdominal Imaging Workshop, Nagoa University, Nagoya, Japan, . Springer. [bibtex-entry]

  91. Kaikai Shen, Stephen Rose, Jurgen Fripp, Katie McMahon, Greig de Zubicaray, Nicholas Martin, Margaret Wright, and Olivier Salvado. Test-Retest Reliability in Fibre Orientation Distribution (FOD) Measurements in HARDI DATA. In ISMRM 2013, Salt Lake City, Utah, USA, . International Society for Magnetic Resonance in Medicine. [bibtex-entry]

  92. Xavier Sirault, Jurgen Fripp, Anthony Paproki, Helen Daily, Tom Guo, Peter Kuffner, Chuong Nguyen, Ron Li, and Bob Furbank. PlantScan?: a three-dimensional phenotyping platform for capturing the structural dynamic of plant development and growth. In 7th International Conference on Functional-Structural Plant Models, Hotel Riekonlinnan, Saariselk„, Finland, . Unknown. [bibtex-entry]

  93. Zhengyi Yang, Jurgen Fripp, Ying Xia, Shakes Chandra, Tania Brancato, Craig Engstrom, Olivier Salvado, Raphael Schwarz, Lars Lauer, and Stuart Crozier. Morphology-based Interslice Interpolation on Manual Segmentations of Joint Bones and Muscles in MRI. In Digital Image Computing: Techniques and Applications (DICTA), Fremantle, Western Australia, . IEEE. [bibtex-entry]


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