Publications of Pierrick Bourgeat

Thesis

1. P. Bourgeat. Segmentation d'Images de Semi-Conducteurs Appliquée à la Détection de Défauts. Thèse de sciences, Université de Bourgogne, July 2004.
   Note: Title translation: Semiconductor Image Segmentation Applied to Defects Detection. [bibtex-entry]

Articles in journal or book chapters

1. O. Acosta, J. Fripp, V. Dore, P. Bourgeat, J-M. Favreau, G. Chételat, A. Rueda, V.L. Villemagne, C. Szoeke, D. Ames, K.A. Ellis, R.N. Martins, C.L. Masters, C.C. Rowe, E. Bonner, F. Gris, D. Xiao, P. Raniga, V. Barra, and O. Salvado. Cortical surface mapping using topology correction, partial flattening and 3D shape context-based non-rigid registration for use in quantifying atrophy in Alzheimer's disease. Journal of Neuroscience Methods, 205(1):96-109, March 2012. [bibtex-entry]


2. Kai-kai Shen, Jurgen Fripp, Fabrice Mériaudeau, Gaël Chételat, Olivier Salvado, and Pierrick Bourgeat. Detecting global and local hippocampal shape changes in Alzheimer's disease using statistical shape models. NeuroImage, 59(3):2155--2166, 2012. [bibtex-entry]


3. G. Chételat, V.L. Villemagne, K.E. Pike, K.A. Ellis, P. Bourgeat, G. Jones, G. O'Keefe, O. Salvado, C. Szoeke, R.N. Martins, D. Ames, C.L. Masters, and C.C. Rowe. Independent contribution of temporal AB deposition to memory decline in the predementia phase of Alzheimer's disease. Brain, 134(3):798--807, February 2011. [bibtex-entry]


4. K.A. Ellis, C.C. Rowe, C. Szoeke, V.L. Villemagne, D. Ames, G. Chételat, R.N. Martins, C.L. Masters, J. Fripp, O. Acosta, P. Raniga, P. Bourgeat, and O. Salvado. Advances in structural and molecular neuroimaging in Alzheimer's disease. The Medical Journal of Australia, 194(4):S20--S23 , February 2011. [bibtex-entry]


5. A. Neubert, O. Salvado, O. Acosta, P. Bourgeat, and J. Fripp. Constrained reverse diffusion for thick slice interpolation of 3D volumetric MRI images. Computerized Medical Imaging and Graphics, in press, 2011. [bibtex-entry]


6. V. Villemagne, K. Pike, G. Chételat, KA. Ellis, R. Mulligan, P. Bourgeat, U. Ackermann, G. Jones, C. Szoeke, O. Salvado, R. Martins, G. O'Keefe, C. Mathis, W. Klunk, D. Ames, C. Masters, and C. Rowe. Longitudinal assessment of Abeta and cognition in aging and Alzheimer's disease. Annals of Neurology, 69(1):181--192 , January 2011. [bibtex-entry]


7. A.D. Watt, K.A. Perez, N.G. Faux, K.E. Pike, C.C. Rowe, P. Bourgeat, O. Salvado, C. Masters, V. Villemagne, and K.J. Barnham. Increasing the predictive accuracy of beta-amyloid blood-borne biomarkers in Alzheimer’s disease. Journal of Alzheimer's Disease, 24(1):47--59 , March 2011. [bibtex-entry]


8. P. Bourgeat, G. Chételat, V. Villemagne, J. Fripp, P. Raniga, K. Pike, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, R. Martins, C. Masters, C. Rowe, O. Salvado, and the AIBL Research Group. AB burden in the temporal neocortex is related to hippocampal atrophy in elderly subjects without dementia. Neurology, 74(2):121--127, January 2010. [bibtex-entry]


9. G. Chételat, V. Villemagne, P. Bourgeat, K. Pike, G. Jones, D. Ames, K. Ellis, C. Szoeke, R. Martins, G. O'Keefe, O. Salvado, C. Masters, C. Rowe, and the AIBL Research Group. Relationship between atrophy and B-amyloid deposition in Alzheimer's disease. Annals of Neurology, 67(3):317--324, March 2010. [bibtex-entry]


10. G. Chételat, V. Villemagne, K. Pike, J-C. Baron, P. Bourgeat, G. Jones, KA. Ellis, O. Salvado, C. Szoeke, R. Martins, D. Ames, C. Masters, and C. Rowe. Larger temporal volume in elderly with high versus low beta-amyloid deposition. Brain, 133(11):3336--3348, November 2010. [bibtex-entry]


11. P. Guitera, P. Bourgeat, J.R. Stretch, R.A. Scolyer, S. Ourselin, C. Lean, J.F. Thompson, and R. Bourne. Diagnostic value of 8.5T magnetic resonance spectroscopy of benign and malignant skin lesion biopsies. Melanoma Research, 20(4):311--317, August 2010. [bibtex-entry]


12. C. Rowe, K. Ellis, M. Rimajova, P. Bourgeat, K.E. Pike, G. Jones, J. Fripp, H. Tochon-Danguy, L. Morandeau, G. O'Keefe, R. Price, P. Raniga, P. Robins, O. Acosta, N. Lenzo, C. Szoeke, O. Salvado, R. Head, R. Martins, C.L. Masters, D. Ames, and V.L. Villemagne. Amyloid imaging results from the Australian imaging, biomarkers and lifestyle study of ageing (AIBL). Neurobiology of Aging, 31(8):1275--1283, August 2010. [bibtex-entry]


13. Andrea Rueda, Oscar Acosta, Michel Couprie, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Eduardo Romero, and Olivier Salvado. Topology-corrected segmentation and local intensity estimates for improved partial volume classification of brain cortex in MRI. Journal of Neuroscience Methods, 188(2):305-315, May 2010. [bibtex-entry]


14. V. Villemagne, K. Perez, K. Pike, W. Kok, C. Rowe, A. White, P. Bourgeat, O. Salvado, J. Bedo, C. Hutton, N. Faux, C. Masters, and K. Barnham. Blood borne AB dimer correlates with clinical markers of Alzheimer's disease. Journal of Neurosciences, 30(18):6315--6322, May 2010. [bibtex-entry]


15. D. Xiao, D. Zahra, P. Bourgeat, P. Berghofer, O. Acosta , C. Winberley, M.C. Gregoire, and O. Salvado. An improved 3D shape context based non-rigid registration method and its application to small animal skeletons registration. Computerized Medical Imaging and Graphics, 34(4):321-332, June 2010. [bibtex-entry]


16. Oscar Acosta, Pierrick Bourgeat, Maria A. Zuluaga, Jurgen Fripp, Olivier Salvado, and Sebastien Ourselin. Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. Medical Image Analysis, 13(5):730-743, October 2009. [bibtex-entry]


17. J. Fripp, P. Bourgeat, O. Acosta, P. Raniga, M. Modat, K.E. Pike, G. Jones, G. O'Keefe, C.L. Masters, D. Ames, K.A. Ellis, P. Maruff, J. Currie, V.L. Villemagne, C.C. Rowe, O. Salvado, and S. Ourselin. Appearance Modeling of 11C PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairement and healthy aging. NeuroImage, 43(3):430-439, Novembre 2008. [bibtex-entry]


18. P. Raniga, P. Bourgeat, J. Fripp, O. Acosta, V. Villemagne, C. Rowe, C. Masters, G. Jones, G. O'Keefe, O. Salvado, and S. Ourselin. Automated [11]C-PiB Standardized Uptake Value Ratio. Academic Radiology, 15(11):1376-1389, November 2008. [bibtex-entry]


19. P. Bourgeat, J. Fripp, P. Stanwell, S Ramadan, and S. Ourselin. MR image segmentation of the knee bone using phase information. Medical Image Analysis, 11(4):325--335, July 2007. [bibtex-entry]


20. J. Fripp, P. Bourgeat, S. Crozier, and S.n Ourselin. Shape based segmentation of MRIs of the knee using phase and magnitude information. Academic Radiology, 14(10):1201--1208 , October 2007. [bibtex-entry]


21. P. Bourgeat, P. Gorria, K.W. Tobin, and F. Meriaudeau. Gabor Filtering for Feature Extraction on Complex Images: Application to Defect Detection on Semiconductors. The Imaging Science Journal, 54(4):200--210, December 2006. [bibtex-entry]


22. P. Bourgeat, F. Meriaudeau, K.W. Tobin, and P. Gorria. Content Based Segmentation of Patterned Wafers. Journal of Electronic Imaging Special Issue on Quality Control by Artificial Vision, 13(3):428--435, July 2004. [bibtex-entry]


23. P. Bourgeat, F. Meriaudeau, K.W. Tobin, and P. Gorria. Patterned Wafer Segmentation. SME Technical Paper, MV03-242, June 2003. [bibtex-entry]

Conference articles

1. V. Doré, P. Bourgeat, J. Fripp, O. Acosta, G. Chetelat, C. Szoeke, K.A. Eliis, R.N. Martin, N. Lenzo, V. Villemagne, C.L. Master, D. Ames, C.C. Rowe, O. Salvado, and the AIBL Research Group. Cortical Thickness comparison between PiB-positive and PiB-negative Healthy Control patients. In In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association, Vol. 7, Issue 4, pp S210-S211, 2011 . [bibtex-entry]


2. V. Doré, J. Fripp, P. Bourgeat, O. Acosta, and O. Salvado. MRI Intensity Tissues Normalisation for Longitudinal Surface Based Analysis of the WM/GM Contrast, application to Alzheimer's Disease. In In Proceedings of the 19th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Montreal, Canada, May 7-13 2011, 2011 . [bibtex-entry]


3. V. Doré, J. Fripp, P. Bourgeat, K. Shen, and O. Salvado. Surface-base Approach using a Multi-Scale EM-ICP Registration for Statistical Population Analysis. In In Proceedings of the Digital Image Computing Techniques and Applications (DICTA) Conference, to appear, 2011 . [bibtex-entry]


4. Kathryn A. Ellis, Christopher Rowe, Olivier Salvado, Colin Masters, Ralph Martins, Victor Villemagne, Pierrick Bourgeat, David Ames, Paul Maruff, Greg Savage, Lance Macaulay, Cassandra Szoeke, Paul Yates, Carolina Restrepo, and AIBL research group. Normative neuropsychology datasets free from prodromal Alzheimer's disease (AD) cases may improve sensitivity for detecting early cognitive decline: Data from the AIBL study. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association. [bibtex-entry]


5. Amir Fazlollahi, Nicholas Dowson, Fabrice Meriaudeau, Stephan Rose, Michael Fay, Paul Thomas, Zeike Taylor, Yaniv Gal, Alan Coultard and Craig Winter, David MacFarlane, Olivier Salvado, Stuard Crozier, and Pierrick Bourgeat. Automatic Brain Tumour Segmentation in 18F-FDOPA PET Using PET/MRI Fusion. In 2011 International Conference on Digital Image Computing: Techniques and Applications, pages 325-329, 2011. [bibtex-entry]


6. Shaun Frost, Ralph Martins, Pierrick Bourgeat, Yogesan Kanagasingam, Christopher Rowe, and AIBL research group. Retinal vascular parameters as biomarkers for Alzheimer's disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association. [bibtex-entry]


7. E. Pierre, N. Seiberlich, V. Gulani, P. Bourgeat, O. Salvado, and M. Griswold. Image Deformation Based ABSINTHE. In Proceedings of the 19th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Montreal, Canada, May 7-13 2011. [bibtex-entry]


8. P. Raniga, P. Schmitt, P. Bourgeat, J. Fripp, V. Villemagne, C. Rowe, and O. Salvado. Local Intensity Model: An Outlier Detection Framework With Applications To White Matter Hyperintensity Segmentation. In Biomedical Imaging: From Nano to Macro, 2011. ISBI 2011. 8th IEEE International Symposium on, Chicago, IL, March 2011. IEEE. [bibtex-entry]


9. Christopher Rowe, Kathryn Ellis, Belinda Brown, Pierrick Bourgeat, Richard Head, Ralph Martins, Olivier Salvado, David Ames, Colin Masters, and Victor Villemagne. The consequences of A¿ deposition in aging and Alzheimer's disease: Results from 366 elderly subjects. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association. [bibtex-entry]


10. Kaikai Shen, Pierrick Bourgeat, Nicholas Dowson, Fabrice Meriaudeau, and Olivier Salvado. Atlas selection strategy using least angle regression in multi-atlas segmentation propagation. In 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pages 1746--1749, April 2011. IEEE. [bibtex-entry]


11. Kaikai Shen, Pierrick Bourgeat, Jurgen Fripp, Fabrice Meriaudeau, and Olivier Salvado. Detecting hippocampal shape changes in Alzheimer's disease using statistical shape models. In Medical Imaging 2011: Image Processing, volume 7962, Lake Buena Vista, Florida, USA, pages 796243--7 , 2011. SPIE. [bibtex-entry]


12. Kaikai Shen, Pierrick Bourgeat, Fabrice Meriaudeau, and Olivier Salvado. Atlas selection strategy in multi-atlas segmentation propagation with locally weighted voting using diversity-based MMR re-ranking. In Medical Imaging 2011: Image Processing, volume 7962, Lake Buena Vista, Florida, USA, pages 79621B--6 , 2011. SPIE. [bibtex-entry]


13. Kaikai Shen, Jurgen Fripp, Fabrice Meriaudeau, Gaël Chetelat, Olivier Salvado, and Pierrick Bourgeat. Localization of hippocampal atrophy in Alzheimer's disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France , pages S17--S18, July 2011. [bibtex-entry]


14. Nicolas Villain, Gaël Chételat, Blandine Grassiot, Pierrick Bourgeat, Gareth Jones, Kathryn Ellis, David Ames, Ralph N.W. Martins, Olivier Salvado, Colin Masters, Victor Villemagne, and Christopher Rowe. Dynamic of beta-amyloid deposition in healthy elderly, mild cognitive impairment and alzheimer's disease: a PiB-PET longitudinal study. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association. [bibtex-entry]


15. Victor Villemagne, Kathryn Ellis, Gael Chetelat, Pierrick Bourgeat, Gareth Jones, Ralph Martins, Olivier Salvado, David Ames, Colin Masters, and Christopher Rowe. A¿ accumulation correlates with cognitive decline: results from the longitudinal AIBL study. In Alzheimer's Association International Conference in Alzheimer's Disease 2011, Paris, France, July 16-21 2011. Alzheimer's Association. [bibtex-entry]


16. D. Xiao, D. Zahra, P. Bourgeat, P. Berghofer, O. Acosta , C. Winberley, M.C. Gregoire, and O. Salvado. An accurate 3D shape context based non-rigid registration method for mouse whole-body skeleton registration. In Proc. of SPIE, Medical Imaging 2011: Image Processing, San Diego, USA, pages 79620V, February 2011. [bibtex-entry]


17. Oscar Acosta, Jurgen Fripp, Andrea Rueda, Di Xiao, Erik Bonner, Pierrick Bourgeat, and Olivier Salvado. 3D shape context surface registration for cortical mapping. In 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Rotterdam, The Netherlands, pages 1021--1024, 14-17 April 2010 . IEEE. [bibtex-entry]


18. Neil Burdett, Jurgen Fripp, Pierrick Bourgeat, and Olivier Salvado. MILXView: A Medical Imaging, Analysis and Visualization Platform. In IFIP Advances in Information and Communication Technology, volume 335, pages 177, 2010. Springer. [bibtex-entry]


19. G. Chételat, V. Villemagne, K. Pike, J-C. Baron, P. Bourgeat, G. Jones, K. Ellis, O Salvado, C. Szoeke, R. Martins, D. Ames, C. Masters, and C. Rowe. Larger temporal volume in asymptomatic elderly with high versus low beta-amyloid deposition. In 13th International Conference on Alzheimer's Disease, Honolulu, Hawaii, July 10-15 2010. . [bibtex-entry]


20. J. Dowling, J. Lambert, J. Parker, J. Fripp, J. Denham, C. Wratten, P. Bourgeat, C Tang, O. Salvado, and P.B. Greer. Feasibility of Atlas Based Organ Segmentation and Electron Density Mapping for MRI Based Prostate Radiation Therapy Planning. In Fifty sixth annual meeting of the Canadian Organization of Medical Physicists and the Canadian College of Physicists in Medicine, volume 37 , pages 3907, 2010. Medical Physics. [bibtex-entry]


21. Nicholas Dowson, Pierrick Bourgeat, S. Rose and M. Daglish, J. Smith, M. Fay, A. Coulthard , C. Winter, D. MacFarlane, and P. Thomas and O. Salvado. Joint Factor and Kinetic Analysis of Dynamic FDOPA PET Scans of Brain Cancer Patients.. In Tianzi Jiang, Nassir Navab, and Max Pluim, Josien and Viergever, editors, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010, volume 6362 of Lecture Notes in Computer Science, pages 185-192, 2010 . Springer. [bibtex-entry]


22. Kelvin Leung, Kai-Kai Shen, Josephine Barnes, Gerard Ridgway, Matthew Clarkson, Jurgen Fripp, Olivier Salvado, Fabrice Meriaudeau, Nick Fox, Pierrick Bourgeat, and Sébastien Ourselin. Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. In Tianzi Jiang, Nassir Navab, Josien Pluim, and Max Viergever, editors, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2010, volume 6362 of Lecture Notes in Computer Science, pages 125-132, 2010 . Springer. [bibtex-entry]


23. P. Raniga, J. Fripp, O. Acosta, P. Bourgeat, C Szoeke, G O'Keefe, K. Ellis, R. Martins, G Chetelat, V. Villemagne, C. Masters, D. Ames, C. Rowe, and O. Salvado. Effects of partial volume correction on the analysis of 11C-PiB PET in assessing Alzheimer's disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2010, Honolulu, USA, July 10-15 2010. Alzheimer's Association . [bibtex-entry]


24. P. Raniga, K. Pannek, J. Fripp, D. Raffelt, P. Bourgeat, O. Acosta, D. Tournier, A. Connelly, S. Rose, and O. Salvado. A Monte-Carlo approach for estimating white matter density in HARDI diffusion data. In Proceedings of the 18th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Stockholm, Sweden, May 1-7 2010. [bibtex-entry]


25. S. Rose, S. Crozier, P. Bourgeat, N. Dowson, O. Salvado, P. Raniga, K. Pannek, A. Coulthard, M. Fay, P. Thomas, and D. Macfarlane. Improved Delineation of Brain Tumour Margins using Whole-brain Track-Density Mapping. In Proceedings of the 19th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Stockholm, Sweden, May 1-7 2010. [bibtex-entry]


26. C. Rowe, K. Ellis, G. Chételat, K. Pike, M. Rimajova, C. Szoeke, P. Bourgeat, O Salvado, R. Martins, C. Masters, D. Ames, V. Villemagne, and the AIBL Research Group. Baseline and follow-up neuroimaging results from the Australian Imaging, Biomarker, and Lifestyle flagship study of Ageing (AIBL). In 13th International Conference on Alzheimer's Disease, Honolulu, Hawaii, July 10-15 2010. . [bibtex-entry]


27. Kaikai Shen, Pierrick Bourgeat, Jurgen Fripp, Fabrice Meriaudeau, David Ames, Kathryn A. Ellis, Colin L. Masters, Victor L. Villemagne, Christopher C. Rowe, and Olivier Salvado. Supervised method to build an atlas database for multi-atlas segmentation-propagation. In Nico Karssemeijer and Ronald M. Summers, editors, Medical Imaging 2010: Computer-Aided Diagnosis, volume 7624, San Diego, California, USA, pages 76241N--8 , March 2010. SPIE. [bibtex-entry]


28. D. Xiao, D. Zahra, P. Bourgeat, P. Berghofer, O. Acosta , C. Winberley, M.C. Gregoire, and O. Salvado. A non-rigid registration approach for mouse whole body skeleton registration. In Proc. of SPIE, Medical Imaging 2010: Bimedical Applications in Melecular, Structural, and Functional Imaging, San Diego, USA, pages 76261N, February 2010. [bibtex-entry]


29. D. Xiao, D. Zahra, P. Bourgeat, P. Berghofer, O. Acosta , C. Winberley, M.C. Gregoire, and O. Salvado. An improved 3D shape context registration method for non-rigid surface registration. In Proc. of SPIE, Medical Imaging 2010: Image Processing, San Diego, USA, pages 76232Q, February 2010. [bibtex-entry]


30. P. Bourgeat, V. Villemagne, J. Fripp, K. Pike, P. Raniga, O. Acosta, C. Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, C. Rowe, and O. Salvado. Relation between amyloid burden, brain atrophy and cognition in Alzheimer's disease. In 12th International Conference on Alzheimer's Disease, Vienna, Austria, July 11-16 2009. . [bibtex-entry]


31. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. B. Greer, J. Patterson, J. Denham, S. Gupta, C. Tang, P. Stanwell, S. Ourselin, and O. Salvado. Nonrigid correction of interleaving artefacts in pelvic MRI. In Josien P. W. Pluim and Benoit M. Dawant, editors, Proceedings of SPIE Medical Imaging 2009: Image Processing, Florida, volume 7259, pages 72592P, 2009. SPIE. [bibtex-entry]


32. J. Fripp, P. Bourgeat, C. Engstrom, S. Ourselin, S. Crozier, and O. Salvado. Automated Segmentation of the Menisci From MR Images. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 510-513, June 2009. [bibtex-entry]


33. J. Fripp, V. Villemagne, P. Bourgeat, P. Raniga, O. Acosta, C. Szoeke, D. Ames, K.A. Ellis, C.L. Masters, C. Rowe, and O. Salvado. Characterizing 11C PiB PET Images.. In 12th International Conference on Alzheimer's Disease, 2009.
    Note: Accepted. [bibtex-entry]


34. Parnesh Raniga, Pierrick Bourgeat, Jurgen Fripp, Oscar Acosta, Sebastien Ourselin, Christopher Rowe, Victor L Villemagne, and Olivier Salvado. Alzheimers disease detection using 11C-PiB with improved partial volume effect correction. In SPIE: Medical Imaging, Lake Buena Vista, FL, USA, 2009. SPIE. [bibtex-entry]


35. P. Raniga, V. Villemagne, J. Fripp, P. Bourgeat, O. Acosta, C Szoeke, S. Ourselin, D. Ames, K. Ellis, C. Masters, O. Salvado, and C. Rowe. Correlation between white matter hyperintensities in MRI-FLAIR and 11C-PiB PET retention. A new potential for early identification of disease. In Alzheimer's Association International Conference in Alzheimer's Disease 2009, Vienna, Austria, July 11-16 2009. Alzheimer's Association. [bibtex-entry]


36. Andrea Rueda, Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Nicholas Dowson, Michel Couprie, Eduardo Romero, and Olivier Salvado. Partial Volume Estimation orf Brain Cortex From MRI Using Topology-Corrected Segmentation. In 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, Massachusetts, USA, pages 133-136, June 2009 . IEEE. [bibtex-entry]


37. D. Xiao, P. Bourgeat, J. Fripp, O. Acosta, M.C. Gregoire , and O. Salvado. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context. In Proc. of SPIE, Medical Imaging 2009: Image Processing, volume 7259, pages 72591G, 2009. [bibtex-entry]


38. D. Xiao, D. Zahra, P. Bourgeat, J. Fripp, P. Berghofer , O. Acosta, M.C. Gregoire, and O. Salvado. Hybrid non-rigid registration method for registering rat skeletons from micro-CT images. In SNM 2009 Annual Meeting, Toronto, Canada, June 2009. [bibtex-entry]


39. Oscar Acosta, Pierrick Bourgeat, Jurgen Fripp, Erik Bonner, Sebastien Ourselin, and Olivier Salvado. Automatic delineation of sulci and improved partial volume classification for accurate 3D cortical thickness estimation from MR. In 11th International Conference on Medical Image Computing and Computer-Assisted Interventions (MICCAI 2008), LNCS, New York, USA, pages 253-261, September 2008 . SPRINGER. [bibtex-entry]


40. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. New cortical thickness estimation method for atrophy characterization of Alzheimer's disease patients. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. . [bibtex-entry]


41. P. Bourgeat, O. Acosta, J. Fripp, C. Masters, C. Rowe, V. Villemagne, O. Salvado, and S. Ourselin. Cortical thickness estimation of Alzheimer's disease patients: Application to the Australian Imaging Biomarkers and Lifestyle (AIBL) study. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping . [bibtex-entry]


42. P. Bourgeat, O. Acosta, M. Zuluaga, J. Fripp, O. Salvado, and S. Ourselin. Improved cortical thickness measurement from MR images using partial volume estimation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 205-208 , April 2008. IEEE. [bibtex-entry]


43. J. Dowling, P. Bourgeat, D. Raffelt, J. Fripp, P. Greer, J. Patterson, J. Denham, P. Stanwell, S. Ourselin, and O. Salvado. Fast automatic correction of non-rigid motion artefacts in MRI of the abdomen. In Proceedings of MICCAI Prostate Workshop (New York, September 2008), 2008. [bibtex-entry]


44. K.A. Ellis, V.L. Villemagne, D. Ames, N. Lenzo, K.E. Pike , G. O'Keefe, H. Tochon-Danguy, R. Price, G. Jones, M. Rimajova , P. Bourgeat, P. Raniga, J. Fripp, O. Acosta, O. Salvado , R. Martins, C.L. Masters, and C.C. Rowe. The Australian biomarker, imaging and lifestyle study: Preliminary PiB results. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. . [bibtex-entry]


45. J. Fripp, P. Bourgeat, O. Acosta, G. Jones, V. Villemagne, S. Ourselin, C. Rowe, and O. Salvado. Generative atlases and atlas selection for C11-PIB PET-PET registration of Elderly, Mild cognitive impaired and Alzheimer disease patients. In International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, pages 1155-1158, May 2008 . IEEE. [bibtex-entry]


46. J. Fripp, P. Bourgeat, P. Raniga, O. Acosta, C. Masters, C. Rowe, V. Villemagne, S. Ourselin, and O. Salvado. Modeling the appearance variation of 11C-PiB PET images.. In 11th International Conference on Alzheimer's Disease, Chicago, Il, July 26-31 2008. [bibtex-entry]


47. J. Fripp, P. Bourgeat, P. Raniga, O Acosta, V. Villegmane, G. O'keefe, G. Jones, C. Rowe, S. Ourselin, and O. Salvado. MR-less high dimensional spatial normalization of 11C PiB PET images on a population of Elderly, Mild cognitive impaired and Alzheimer disease patients. In 11th International Conference on Medical Image Computing and Computer Assisted Intervention, pages 442-449 , 2008. [bibtex-entry]


48. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, S. Ourselin, C. Masters, D. Ames, P. Hudson, C. Rowe, V. Villemagne, and O. Salvado. Optimization Of Partial Volume Correction Strategies for [11]C-PiB Quantification. In Alzheimer's Association International Conference in Alzheimer's Disease 2008, Chicago, IL, July 26-31 2008. Alzheimer's Association. [bibtex-entry]


49. P. Raniga, J. Fripp, P. Bourgeat, O. Acosta, V. Villemagne, C. Rowe, C. Masters, O. Salvado, and S. Ourselin. Automated Standardized Uptake Value Ratio of 11C-PIB PET analysis in Alzheimers disease. In 14th Annual Meeting of the Organization for Human Brain Mapping, Melbourne, Australia, June 15-19 2008. Organization for Human Brain Mapping.
    Note: CD-ROM paper number 345 W-AM . [bibtex-entry]


50. Maria Zuluaga, Oscar Acosta, Pierrick Bourgeat, Olivier Salvado, Marcela Hernandez, and Sebastien Ourselin. Cortical Thickness Measurement from Magnetic Resonance Images Using Partial Volume Estimation. In Proceedings of SPIE: Image Processing, volume 6914, San Diego, USA, pages 8p, February 2008 . [bibtex-entry]


51. T-M. Diep, P. Bourgeat, and S. Ourselin. Efficient Use of Cerebral Cortical Thickness to Correct Brain MR Segmentation. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington DC, USA, pages 592-595 , April 2007. IEEE. [bibtex-entry]


52. J. Fripp, P. Bourgeat, S. Crozier, and S. Ourselin. Shape-based segmentation of MRIs of the bones in the knee. In SPIE: Medical Imaging, volume 6512, San Diego, CA, USA, pages 651212, February 2007 . SPIE. [bibtex-entry]


53. M. Holden, R. Moreno-Vallecillo, A. Harris, L. J. Gomes, T.-M. Diep, P. Bourgeat, and S. Ourselin. Expectation Maximization Classification and Laplacian-Based Thickness Measurement for Cerebral Cortex Thickness Estimation. In SPIE Medical Imaging, volume 6512, San Diego, California, pages 65120M, February 17-22 2007 . [bibtex-entry]


54. P. Raniga, P. Bourgeat, V. Villemagne, G. O'Keefe, C. Rowe, and S. Ourselin. Automatic Cerebellar Grey Matter Extraction from PIB PET Images for SUVR Computation. In 13th Annual Meeting of the Organization for Human Brain Mapping, Chicago, IL, June 10-14 2007. Organization for Human Brain Mapping.
    Note: CD-ROM paper number 234 TH-PM . [bibtex-entry]


55. P. Raniga, P. Bourgeat, V. Villemagne, G. O'Keefe, C. Rowe, and S. Ourselin. PIB-PET Segmentation for Automatic SUVR Normalization Without MR Information. In Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on, Washington DC, pages 348--351 , April 2007. IEEE. [bibtex-entry]


56. Parnesh Raniga, Pierrick Bourgeat, Victor Villemagne, Graeme O'Keefe, Christopher Rowe, and Sébastien Ourselin. Spline Based Inhomogeneity Correction for [11]C-PIB PET Segmentation Using Expectation Maximization. In Nicholas Ayache, Sébastien Ourselin, and Anthony Maeder, editors, Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2007, volume 4791 of LNCS, pages 228--235 , 2007. Springer. [bibtex-entry]


57. O. Salvado, P. Bourgeat, O. Acosta-Tamayo, and M. Zuluaga and S. Ourselin. Fuzzy classification of brain MRI using a priori knowledge: weighted fuzzy C-means. In MMBIA'07, Rio de Janeiro, October 2007. ICCV 2007. [Abstract] [bibtex-entry]


58. P. Bourgeat, J. Fripp, P. Stanwell, S. Ramadan, and S. Ourselin. MR image segmentation using phase information and a novel multiscale scheme. In 9th International Conference on Medical Image Computing And Computer-Assisted Intervention (MICCAI'06), volume 4191 of LNCS, Copenhagen, Denmark, pages 920--927, October 1-6 2006 . Springer. [bibtex-entry]


59. P. Bourgeat, P. Stanwell, S. Ramadan, and S. Ourselin. Texture-based segmentation of the knee bones in MRI using phase information. In IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, Virginia, pages 742-745, April 6-9 2006 . IEEE. [bibtex-entry]


60. P. Bourgeat, P. Stanwell, S. Ramadan, and S. Ourselin. Using the phase for MR image segmentation: Application to the bone of the knee. In Proceedings of the 14th International Society of Magnetic Resonance in Medicine (ISMRM) Scientific Meeting, Seattle, Washington, May 6-12 2006 . [bibtex-entry]


61. P. Bourgeat, J. Fripp, A. Janke, G. Galloway, S. Crozier, and S. Ourselin. The use of unwrapped phase in MR image segmentation: A preliminary study. In 8th International Conference on Medical Image Computing And Computer-Assisted Intervention (MICCAI'05), volume 3750 of LNCS, Palm Springs, California, pages 813-820, October 26-29 2005 . Springer Verlag. [bibtex-entry]


62. P. Bourgeat and F. Meriaudeau. Classifier vote and Gabor filter banks for wafer segmentation. In International Conference on Image Processing 2005 (ICIP 2005), volume 1, Genova, Italy, pages 369-372, Sept 11-14 2005 . IEEE. [bibtex-entry]


63. J. Fripp, P. Bourgeat, A.U.J Mewes, S.K. Warfield, S. Crozier, and S. Ourselin. 3D statistical shape models to embed spatial relationship information. In Computer Vision for Biomedical Image Applications: Current techniques and future trends, an ICCV workshop, volume 3765 of LNCS, Beijing, China, pages 51-60, October 2005 . Springer Verlag. [bibtex-entry]


64. P. Bourgeat, F. Meriaudeau, P. Gorria, K.W. Tobin, and F. Truchetet. Features extraction on complex images. In IEEE International Conference on Image Processing (ICIP'04), volume 1, Singapore, pages 219-222, 2004 . IEEE. [bibtex-entry]


65. P. Bourgeat, F Meriaudeau, P Gorria, and W.T Keneth. Comparison of texture features for segmentation of patterned wafers. In Wavelet Applications in Industrial Processing - SPIE Photonic East 2003, volume 5266, Providence, RI, USA, pages 179-190, October 27-30 2003. SPIE . [bibtex-entry]


66. P. Bourgeat, F Meriaudeau, P Gorria, and W.T Keneth. Content-based segmentation of patterned wafer for automatic threshold determination. In Machine Vision Application in Industrial Inspection XI - SPIE Electronic Imaging 2003, volume 5011, Santa Clara, CA, USA, pages 183-189, January 20-24 2003. SPIE. [bibtex-entry]


67. P. Bourgeat, F. Meriaudeau, P. Gorria, and K. W. Tobin. Patterned wafer segmentation. In 6th International Conference on Quality Control by Artificial Vision (QCAV '03), volume 5132, Gatlinburg, TN, USA, pages 36-44, May 19-23 2003. SPIE. [bibtex-entry]


68. P. Bourgeat, F. Meriaudeau, P. Gorria, and K. W. Tobin. Segmentation d'images de semi-conducteur pour la detection de defauts. In 19th GRETSI Symposium on Signal and Image Processing (GRETSI '03) , volume 2, Paris, France, pages 315-319, September 8-11 2003. [bibtex-entry]


69. P. Bourgeat, F. Meriaudeau, and P. Gorria. Defect Detection and Classification on Metallic Part. In Machine Vision Application in Industrial Inspection X - SPIE Electronic Imaging 2002, volume 4664, San Jose, CA, USA, pages 182-189, January 20-25 2002. SPIE. [bibtex-entry]